Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 3.2e-176 621.7 322 100.0
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.9e-126 455.3 360 68.9
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 6.1e-119 431.4 322 68.3
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 2.8e-116 422.5 320 70.0
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 4.8e-116 421.8 321 68.5
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 8.2e-116 421.0 322 65.8
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 1.8e-115 419.9 322 69.3
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 4.1e-115 418.7 322 65.8
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 6.9e-115 417.9 322 68.9
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.5e-114 416.8 321 70.7
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.6e-114 416.0 322 65.5
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 3.4e-114 415.6 322 65.5
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 5.9e-114 414.8 322 66.5
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 7.7e-114 414.5 321 65.4
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.0e-113 414.1 322 67.7
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 1.0e-113 414.1 322 65.5
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.7e-113 413.3 322 64.9
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.9e-113 412.5 324 66.0
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 8.5e-113 411.0 322 64.9
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 8.5e-113 411.0 322 66.5
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 7.2e-112 407.9 322 65.2
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 9.4e-112 407.5 322 64.0
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 9.4e-112 407.5 331 63.7
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 3.6e-111 405.6 323 66.3
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.4e-110 403.7 319 64.6
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.0e-110 402.5 322 66.1
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 3.9e-110 402.1 322 65.8
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 6.7e-110 401.4 322 65.8
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 8.8e-110 401.0 322 64.6
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.1e-109 400.6 322 63.7
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 2.0e-109 399.8 322 64.3
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 2.0e-109 399.8 322 63.4
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 2.0e-109 399.8 322 65.2
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 3.3e-109 399.1 318 64.2
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 4.3e-109 398.7 322 65.2
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 5.7e-109 398.3 321 64.8
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 7.4e-109 397.9 327 64.2
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 9.7e-109 397.5 322 62.4
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.3e-108 397.1 321 63.9
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.8e-108 396.0 298 69.8
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 4.8e-108 395.2 333 62.2
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 8.2e-108 394.4 254 77.2
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.1e-107 394.0 322 62.1
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 3.1e-107 392.5 321 63.6
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.2e-106 390.6 322 62.7
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 2.2e-105 386.3 321 64.5
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.9e-105 386.0 324 61.7
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 5.0e-105 385.2 304 66.1
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 6.5e-105 384.8 321 62.0
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.7e-103 379.4 322 60.9
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 3.6e-103 379.0 322 60.9
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.6e-103 379.0 324 61.4
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 4.7e-103 378.6 321 61.4
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 4.7e-103 378.6 321 61.1
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.1e-103 378.3 331 60.7
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.0e-102 377.5 320 61.2
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.8e-100 369.4 335 58.5
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 6.3e-100 368.2 291 64.3
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.6e-98 362.8 323 59.4
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 3.8e-97 359.0 324 60.5
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 3.8e-97 359.0 322 58.4
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.8e-97 359.0 322 57.1
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.5e-96 357.1 324 59.3
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 7.2e-96 354.8 322 56.5
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 9.4e-96 354.4 291 61.5
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.2e-95 354.0 323 58.5
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.0e-94 350.9 322 58.4
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 5.2e-94 348.6 322 57.1
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 8.8e-94 347.8 322 56.8
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.0e-93 346.7 322 57.5
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 3.3e-93 345.9 324 58.6
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 5.7e-93 345.1 322 56.5
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 5.7e-93 345.1 322 56.2
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 7.5e-93 344.7 322 57.1
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 2.2e-92 343.2 229 72.9
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.8e-91 340.1 322 55.9
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.4e-91 339.7 322 55.9
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 3.1e-91 339.3 222 74.3
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 7.0e-91 338.2 322 55.6
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 7.0e-91 338.2 322 55.6
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 9.1e-91 337.8 322 54.7
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.2e-90 337.4 320 55.3
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.2e-90 337.4 322 57.5
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.6e-90 337.0 322 55.0
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 6.5e-89 331.6 545 40.0
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.2e-88 329.3 263 63.1
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 3.2e-88 329.3 300 58.0
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 5.5e-88 328.6 334 54.8
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 8.0e-87 324.7 240 66.2
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.0e-86 324.3 419 46.3
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 1.4e-86 323.9 322 54.3
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.2e-82 310.8 272 59.2
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 2.9e-81 306.2 322 52.2
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 2.1e-79 300.1 337 50.4
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 8.8e-78 294.7 337 51.0
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 2.0e-77 293.5 323 50.8
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 2.6e-77 293.1 341 49.3
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.2e-76 290.0 375 46.7
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.6e-74 283.9 322 51.6
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 5.9e-74 282.0 326 49.7
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 3.8e-73 279.3 356 50.3
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 8.6e-73 278.1 271 52.8
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 3.0e-70 269.6 297 51.5
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 5.7e-69 265.4 228 58.3
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 6.4e-68 261.9 240 57.9
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.1e-67 261.2 215 60.5
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.8e-67 260.4 255 53.3
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 3.5e-66 256.1 366 42.9
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 6.8e-62 241.9 164 72.6
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 1.2e-58 231.1 262 52.7
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 4.6e-58 229.2 301 45.5
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.5e-56 224.2 164 73.8
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 4.3e-56 222.6 163 66.3
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.8e-53 212.2 172 64.0
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.1e-42 177.2 159 56.6
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 7.3e-40 168.7 312 39.4
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.3e-36 157.9 402 34.6
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.7e-34 150.2 103 68.9
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 3.5e-34 149.8 290 37.9
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-32 144.4 160 50.6
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 1.3e-31 141.4 381 31.2
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 9.9e-29 131.7 125 55.2
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.3e-20 104.8 128 47.7
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.5e-18 96.7 56 87.5
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.0e-17 93.6 53 84.9
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 6.7e-17 92.4 56 78.6
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 5.6e-16 89.4 53 81.1
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 7.4e-16 89.0 84 59.5
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 4.0e-14 83.2 126 43.7
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.5e-12 75.9 75 53.3
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.5e-12 75.9 75 53.3
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.4e-11 74.7 75 52.0
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.5e-11 72.8 75 53.3
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.5e-08 64.7 54 63.0


User provided reference genes

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