Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 2.6e-161 572.0 294 100.0
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 7.4e-140 500.7 297 85.9
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 5.9e-137 491.1 296 84.1
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 5.9e-137 491.1 296 84.1
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 1.6e-134 483.0 297 83.2
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 7.9e-134 480.7 296 82.8
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 5.7e-132 474.6 294 82.0
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 2.2e-131 472.6 297 80.1
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 5.9e-129 464.5 296 80.1
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.0e-128 463.8 294 78.6
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.9e-128 462.2 297 79.1
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.9e-128 462.2 297 79.5
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 5.0e-128 461.5 301 79.1
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 3.2e-127 458.8 298 78.9
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 4.2e-127 458.4 294 77.9
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 9.4e-127 457.2 297 78.1
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 9.4e-127 457.2 296 79.4
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.1e-126 456.1 294 78.9
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 3.6e-126 455.3 297 78.1
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 6.1e-126 454.5 298 76.5
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 8.0e-126 454.1 297 78.5
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.0e-125 453.8 298 77.9
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 2.3e-125 452.6 295 76.6
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 4.0e-125 451.8 297 77.8
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 4.0e-125 451.8 297 77.4
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 8.8e-125 450.7 297 77.1
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.5e-124 449.9 297 76.4
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.0e-124 449.5 297 76.4
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 3.3e-124 448.7 298 76.2
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 5.7e-124 448.0 297 76.8
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 5.7e-124 448.0 294 76.9
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 5.7e-124 448.0 298 75.8
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 5.7e-124 448.0 298 75.8
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 7.5e-124 447.6 293 77.1
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 9.7e-124 447.2 296 76.4
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 9.7e-124 447.2 294 76.9
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 1.3e-123 446.8 294 76.5
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 2.8e-123 445.7 296 75.7
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 3.7e-123 445.3 298 77.2
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 6.3e-123 444.5 294 76.2
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 8.2e-123 444.1 297 75.1
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 8.2e-123 444.1 305 74.8
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 1.1e-122 443.7 297 76.1
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.8e-122 443.0 297 74.4
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 1.8e-122 443.0 297 73.7
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 2.4e-122 442.6 296 75.0
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 5.3e-122 441.4 297 74.1
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 5.3e-122 441.4 297 75.4
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 9.1e-122 440.7 305 74.1
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 2.0e-121 439.5 297 76.4
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 2.0e-121 439.5 297 74.4
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 2.7e-121 439.1 296 75.7
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 5.9e-121 438.0 297 76.4
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 7.7e-121 437.6 298 75.2
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.0e-120 437.2 298 74.2
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.3e-120 436.8 295 74.6
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 2.9e-120 435.6 292 74.0
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 5.0e-120 434.9 298 76.2
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 6.5e-120 434.5 297 74.7
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 8.5e-120 434.1 297 72.1
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.1e-119 433.7 294 75.5
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 1.9e-119 433.0 297 75.1
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 2.5e-119 432.6 292 72.6
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 4.2e-119 431.8 297 74.1
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 4.2e-119 431.8 315 70.2
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 5.5e-119 431.4 292 71.9
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 5.5e-119 431.4 292 72.3
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 5.5e-119 431.4 292 72.6
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 7.2e-119 431.0 292 72.3
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 9.4e-119 430.6 296 74.0
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.2e-118 430.3 315 70.5
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 1.2e-118 430.3 292 75.3
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 2.1e-118 429.5 294 72.8
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 2.1e-118 429.5 294 74.8
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 2.7e-118 429.1 295 72.2
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 1.0e-117 427.2 297 72.1
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 4.0e-117 425.2 296 73.6
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 5.2e-117 424.9 297 73.1
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 5.2e-117 424.9 314 69.1
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 5.2e-117 424.9 292 71.2
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 1.2e-116 423.7 341 66.0
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 1.2e-116 423.7 296 73.0
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 1.5e-116 423.3 292 71.2
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 1.5e-116 423.3 292 71.2
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 1.5e-116 423.3 292 71.2
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 5.7e-116 421.4 282 75.5
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 5.7e-116 421.4 297 71.0
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 2.2e-115 419.5 292 73.3
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 2.2e-115 419.5 292 70.9
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.8e-115 419.1 299 71.2
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 2.8e-115 419.1 298 71.1
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 6.3e-115 417.9 292 71.9
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 8.3e-115 417.5 297 71.7
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 8.3e-115 417.5 296 71.6
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 1.4e-114 416.8 269 77.7
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 4.1e-114 415.2 281 75.1
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 4.1e-114 415.2 298 69.8
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 5.4e-114 414.8 298 70.1
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 7.0e-114 414.5 248 83.5
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 1.2e-113 413.7 297 71.0
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 1.6e-113 413.3 285 72.6
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.3e-112 410.2 295 71.5
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 8.5e-112 407.5 292 70.5
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 2.5e-111 406.0 282 71.6
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 3.2e-111 405.6 277 75.8
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 5.5e-111 404.8 298 69.5
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 4.7e-110 401.7 298 69.1
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 2.7e-105 386.0 296 67.2
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.7e-99 366.7 320 61.9
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 3.5e-97 359.0 219 82.2
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 5.6e-95 351.7 297 64.0
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.2e-92 344.0 291 58.4
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 5.8e-92 341.7 291 56.4
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 5.8e-92 341.7 221 77.8
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 9.8e-92 340.9 296 60.8
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 1.7e-91 340.1 216 77.8
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.0e-88 329.3 291 56.7
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 3.6e-86 322.4 295 57.3
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 8.1e-86 321.2 291 55.3
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 5.2e-85 318.5 223 74.0
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 5.2e-85 318.5 262 58.0
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 4.4e-84 315.5 222 71.6
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 2.9e-83 312.8 288 55.9
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 8.3e-83 311.2 220 70.9
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.7e-81 306.2 273 60.1
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 7.3e-79 298.1 272 60.3
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 7.1e-74 281.6 255 56.5
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 6.9e-69 265.0 176 77.3
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-67 260.8 252 57.1
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 1.1e-61 241.1 150 80.7
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 6.4e-59 231.9 162 67.9
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 4.6e-57 225.7 178 64.0
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 7.4e-55 218.4 203 59.1
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 5.8e-52 208.8 143 67.8
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 4.3e-47 192.6 150 64.0
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 2.1e-46 190.3 266 39.5
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.7e-46 189.5 135 69.6
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 9.0e-45 184.9 181 58.0
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-39 167.9 145 60.7
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.9e-34 150.6 307 34.9
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 3.2e-34 149.8 105 71.4
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 6.7e-32 142.1 106 69.8
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 6.3e-30 135.6 132 58.3
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.5e-28 131.0 99 62.6
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 2.7e-25 120.2 267 31.5
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 5.7e-23 112.5 65 86.2
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 6.3e-22 109.0 116 55.2
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 1.1e-21 108.2 128 50.0
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.4e-18 97.8 81 61.7
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 1.5e-15 87.8 113 47.8
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 3.7e-14 83.2 113 46.0
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 5.0e-11 72.8 91 47.3
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.2e-09 68.2 45 73.3
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 2.1e-09 67.4 51 64.7
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.2e-07 61.6 54 55.6
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 1.5e-07 61.2 59 52.5
VMungo0251G3417 Vigna mungo HOM05D004415 ORTHO05D005198 1.3e-06 58.2 53 56.6
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.3e-06 58.2 54 51.9
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.3e-06 58.2 54 51.9


User provided reference genes

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