Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 2.5e-66 255.4 133 100.0
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 7.9e-57 223.8 133 85.7
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 1.8e-56 222.6 133 86.5
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 6.7e-56 220.7 133 86.5
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 8.8e-56 220.3 133 86.5
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 8.8e-56 220.3 133 85.7
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 1.1e-55 219.9 133 85.0
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 3.3e-55 218.4 133 85.7
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 5.7e-55 217.6 133 83.5
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 7.4e-55 217.2 133 82.7
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 7.4e-55 217.2 133 82.7
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 7.4e-55 217.2 133 85.7
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 9.7e-55 216.9 133 86.5
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 1.3e-54 216.5 133 85.0
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 2.8e-54 215.3 133 83.5
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 3.7e-54 214.9 133 83.5
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 3.7e-54 214.9 133 83.5
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 4.8e-54 214.5 133 82.7
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 6.3e-54 214.2 133 82.0
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 8.2e-54 213.8 133 84.2
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 1.4e-53 213.0 133 83.5
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 1.4e-53 213.0 134 85.1
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 1.4e-53 213.0 133 83.5
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.8e-53 212.6 133 83.5
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 2.4e-53 212.2 133 81.2
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 2.4e-53 212.2 133 83.5
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 2.4e-53 212.2 133 82.0
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 3.1e-53 211.8 133 81.2
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 3.1e-53 211.8 133 82.0
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 4.1e-53 211.5 133 80.5
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 5.3e-53 211.1 133 81.2
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 5.3e-53 211.1 133 81.2
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 6.9e-53 210.7 133 80.5
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 9.1e-53 210.3 133 80.5
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 9.1e-53 210.3 133 82.0
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 1.5e-52 209.5 133 82.0
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.5e-52 209.5 133 82.0
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 2.0e-52 209.1 133 79.7
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 2.0e-52 209.1 133 81.2
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 2.6e-52 208.8 133 79.7
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 2.6e-52 208.8 134 80.6
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 5.9e-52 207.6 133 79.7
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 7.7e-52 207.2 132 81.1
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 1.0e-51 206.8 133 79.7
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 1.0e-51 206.8 133 79.7
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 1.0e-51 206.8 133 79.7
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 1.0e-51 206.8 133 79.7
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 1.3e-51 206.5 133 79.7
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 1.7e-51 206.1 133 78.9
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 1.7e-51 206.1 133 78.2
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 2.2e-51 205.7 133 79.7
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 2.2e-51 205.7 133 78.2
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 2.9e-51 205.3 133 78.2
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 2.9e-51 205.3 132 78.0
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 2.9e-51 205.3 132 78.0
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 2.9e-51 205.3 133 80.5
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 2.9e-51 205.3 132 80.3
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 2.9e-51 205.3 135 81.5
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 5.0e-51 204.5 135 79.3
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 5.0e-51 204.5 132 79.5
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 6.5e-51 204.1 134 79.9
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 6.5e-51 204.1 132 79.5
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 6.5e-51 204.1 133 78.9
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 6.5e-51 204.1 132 79.5
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 6.5e-51 204.1 134 81.3
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 6.5e-51 204.1 133 78.2
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 6.5e-51 204.1 133 79.7
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 8.5e-51 203.8 133 79.7
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.1e-50 203.4 134 80.6
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 1.4e-50 203.0 134 79.1
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 1.4e-50 203.0 130 81.5
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 1.9e-50 202.6 134 79.1
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 1.9e-50 202.6 134 79.1
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 1.9e-50 202.6 134 79.1
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 1.9e-50 202.6 134 79.1
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 2.5e-50 202.2 132 78.8
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 2.5e-50 202.2 136 80.1
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 2.5e-50 202.2 132 77.3
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 2.5e-50 202.2 133 82.0
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 3.2e-50 201.8 132 78.0
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.2e-50 201.8 132 78.0
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 4.2e-50 201.4 134 78.4
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 4.2e-50 201.4 133 79.7
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 4.2e-50 201.4 133 75.9
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 5.5e-50 201.1 133 78.9
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 7.2e-50 200.7 134 80.6
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 7.2e-50 200.7 131 79.4
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 7.2e-50 200.7 134 79.9
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 9.4e-50 200.3 134 80.6
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 1.2e-49 199.9 133 78.2
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.2e-49 199.9 134 78.4
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.2e-49 199.9 134 78.4
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 2.1e-49 199.1 134 77.6
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.1e-49 199.1 132 78.8
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 2.7e-49 198.7 133 78.9
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 2.7e-49 198.7 134 77.6
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 3.6e-49 198.4 132 79.5
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 7.9e-49 197.2 134 77.6
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 1.0e-48 196.8 128 81.2
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.4e-48 196.4 134 79.1
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 1.4e-48 196.4 132 76.5
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 1.8e-48 196.1 136 76.5
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 1.8e-48 196.1 133 78.9
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 3.9e-48 194.9 132 78.0
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 3.9e-48 194.9 133 74.4
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 5.1e-48 194.5 135 78.5
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 5.1e-48 194.5 133 75.9
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 6.7e-48 194.1 132 75.8
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 6.7e-48 194.1 134 77.6
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.1e-47 193.4 132 75.8
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 1.1e-47 193.4 134 77.6
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 1.1e-47 193.4 133 75.9
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 2.0e-47 192.6 132 77.3
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 2.0e-47 192.6 132 75.0
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 2.0e-47 192.6 132 75.0
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 2.6e-47 192.2 133 76.7
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 2.6e-47 192.2 135 78.5
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 2.6e-47 192.2 135 77.0
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 4.4e-47 191.4 133 75.2
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 9.7e-47 190.3 126 77.0
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.2e-46 189.1 105 89.5
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 3.1e-45 185.3 133 74.4
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 5.3e-45 184.5 103 89.3
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 7.0e-45 184.1 131 74.8
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 5.9e-44 181.0 126 75.4
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 6.5e-43 177.6 139 68.3
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 9.4e-42 173.7 165 60.6
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 6.7e-40 167.5 126 69.0
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 9.7e-39 163.7 135 65.9
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.3e-38 163.3 128 68.0
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 2.8e-38 162.2 135 65.9
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.7e-38 161.8 127 68.5
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 1.4e-37 159.8 126 68.3
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 2.4e-37 159.1 137 63.5
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.0e-32 143.7 131 64.1
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.3e-32 142.5 77 93.5
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.5e-31 139.8 129 59.7
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 1.7e-30 136.3 132 59.1
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 2.5e-26 122.5 116 54.3
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 4.0e-24 115.2 78 74.4
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 1.7e-19 99.8 105 51.4
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.5e-15 86.7 70 62.9
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 4.1e-13 78.6 48 79.2
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 4.7e-09 65.1 78 43.6
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 6.1e-09 64.7 92 41.3


User provided reference genes

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