Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 4.9e-146 521.2 273 100.0
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 6.5e-106 387.9 264 75.8
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 5.3e-100 368.2 265 72.5
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.6e-99 366.7 265 72.1
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.3e-98 363.6 265 71.3
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 7.2e-97 357.8 265 70.2
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 2.1e-96 356.3 264 71.2
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 7.5e-94 347.8 264 68.9
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.4e-92 343.6 265 67.5
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.4e-92 342.8 320 60.3
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.4e-92 342.8 320 60.3
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 2.7e-91 339.3 264 66.7
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 2.7e-91 339.3 264 67.0
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 4.5e-91 338.6 264 67.4
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 1.5e-89 333.6 265 64.5
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.0e-87 327.4 266 62.8
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 1.4e-87 327.0 266 61.7
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 1.7e-85 320.1 264 63.3
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.7e-85 320.1 265 62.3
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 2.8e-85 319.3 266 63.2
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 3.7e-85 318.9 267 65.2
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 8.3e-85 317.8 266 64.3
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 8.3e-85 317.8 266 64.3
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 1.1e-84 317.4 263 62.7
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 1.1e-84 317.4 267 65.9
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.8e-84 316.6 266 63.9
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 3.1e-84 315.8 266 63.9
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 7.0e-84 314.7 268 63.8
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 9.1e-84 314.3 268 64.9
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 1.7e-82 310.1 265 62.3
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 2.1e-80 303.1 278 60.1
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 2.8e-80 302.8 267 57.7
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 2.8e-80 302.8 265 61.5
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 6.1e-80 301.6 265 60.4
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 3.0e-79 299.3 266 59.0
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 3.0e-79 299.3 266 58.6
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 1.2e-78 297.4 265 59.2
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 1.5e-78 297.0 265 59.6
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 2.0e-78 296.6 269 59.9
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 2.0e-78 296.6 266 61.3
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 4.4e-78 295.4 266 61.3
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 5.7e-78 295.0 243 67.5
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 1.3e-77 293.9 265 61.9
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 2.2e-77 293.1 264 58.3
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 2.8e-77 292.7 237 64.1
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 3.7e-77 292.4 266 58.6
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 6.3e-77 291.6 264 58.0
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 6.3e-77 291.6 268 57.5
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 1.1e-76 290.8 265 59.2
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 1.1e-76 290.8 265 58.1
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 1.4e-76 290.4 271 58.7
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 2.4e-76 289.7 271 57.6
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 3.2e-76 289.3 265 58.1
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 3.2e-76 289.3 269 59.1
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 4.1e-76 288.9 265 58.1
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 9.2e-76 287.7 263 57.4
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.2e-75 287.3 266 60.2
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 4.5e-75 285.4 264 57.6
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 8.6e-74 281.2 268 59.7
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 8.6e-74 281.2 272 56.2
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 3.3e-73 279.3 266 60.2
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 1.2e-72 277.3 267 53.9
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 1.6e-72 276.9 267 55.4
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 2.8e-72 276.2 265 56.2
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 3.1e-71 272.7 272 57.0
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 8.9e-71 271.2 265 55.5
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 8.9e-71 271.2 260 58.8
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 1.2e-70 270.8 268 54.5
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.2e-70 270.8 263 55.1
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 2.0e-70 270.0 267 51.7
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.4e-70 268.9 307 52.4
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 7.5e-70 268.1 269 55.0
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 1.3e-69 267.3 267 53.6
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.2e-69 266.5 270 54.8
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 2.2e-69 266.5 263 57.4
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 6.4e-69 265.0 266 54.5
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 8.3e-69 264.6 270 50.7
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 1.9e-68 263.5 235 62.1
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 3.5e-67 259.2 264 50.4
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 7.8e-67 258.1 264 52.3
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 3.9e-66 255.8 267 53.2
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 3.9e-66 255.8 271 52.0
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 8.6e-66 254.6 268 53.0
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 8.6e-66 254.6 266 53.4
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.9e-65 253.4 269 52.8
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 2.5e-65 253.1 267 52.1
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 3.3e-65 252.7 269 48.3
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 3.3e-65 252.7 269 55.4
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 1.6e-64 250.4 266 51.5
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 3.6e-64 249.2 253 53.8
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 3.6e-64 249.2 266 48.5
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.1e-63 247.7 266 51.9
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 1.8e-63 246.9 264 49.2
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 4.0e-63 245.7 267 51.3
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.0e-62 243.4 268 54.1
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 2.2e-61 240.0 266 46.6
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 2.9e-61 239.6 266 45.9
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 6.4e-61 238.4 274 46.4
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 6.4e-61 238.4 266 46.6
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 1.1e-60 237.7 266 45.5
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 3.2e-60 236.1 243 54.3
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 9.2e-60 234.6 266 46.2
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 1.2e-59 234.2 266 46.6
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 2.7e-59 233.0 266 46.2
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 2.7e-59 233.0 266 46.2
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 2.7e-59 233.0 266 46.2
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 6.0e-59 231.9 266 46.2
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 1.0e-58 231.1 266 45.1
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 2.3e-58 229.9 251 49.4
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 6.6e-58 228.4 265 44.9
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.5e-57 227.3 234 56.8
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.5e-57 227.3 234 50.9
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 1.5e-57 227.3 185 65.9
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 1.9e-57 226.9 266 44.7
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 1.9e-57 226.9 266 44.7
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 4.3e-57 225.7 266 44.7
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 3.6e-56 222.6 235 53.6
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 6.2e-56 221.9 267 51.3
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 8.1e-56 221.5 259 47.5
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.4e-55 220.7 181 67.4
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 4.0e-55 219.2 333 43.8
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.4e-54 216.1 265 47.9
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 7.5e-54 214.9 271 50.9
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 3.2e-52 209.5 237 51.1
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 9.2e-52 208.0 242 50.4
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 4.6e-51 205.7 216 51.9
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 7.8e-51 204.9 226 53.5
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.3e-50 203.4 250 49.2
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 3.9e-50 202.6 248 44.0
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.5e-49 200.7 261 42.5
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 2.5e-49 199.9 163 68.7
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 7.3e-49 198.4 136 73.5
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 2.8e-48 196.4 264 43.6
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 5.2e-47 192.2 253 43.1
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 4.4e-46 189.1 311 36.3
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 9.9e-46 188.0 212 54.7
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.3e-45 187.6 248 43.5
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 1.3e-45 187.6 434 35.7
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 7.8e-43 178.3 152 61.2
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 5.6e-41 172.2 249 41.0
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.1e-39 167.9 158 55.1
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 5.8e-38 162.2 132 64.4
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 9.3e-36 154.8 132 61.4
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.3e-34 150.2 117 64.1
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 6.6e-34 148.7 106 67.9
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 1.1e-33 147.9 127 62.2
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.6e-32 142.9 110 69.1
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 6.2e-32 142.1 130 55.4
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 4.9e-29 132.5 174 46.6
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 1.0e-26 124.8 222 38.3
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.8e-26 124.0 239 38.5
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.3e-26 123.6 106 62.3
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 5.1e-26 122.5 110 65.5
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 4.8e-24 115.9 100 62.0
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 1.9e-20 104.0 88 55.7
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 1.6e-19 100.9 61 70.5
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 2.3e-18 97.1 72 68.1
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 8.7e-18 95.1 85 60.0
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.6e-16 90.9 87 57.5
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 1.2e-14 84.7 81 56.8
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.0e-13 81.6 55 65.5
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 1.0e-13 81.6 47 74.5
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.2e-13 80.5 229 34.5
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 8.4e-13 78.6 92 50.0
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.2e-11 74.7 57 75.4
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 1.2e-11 74.7 45 73.3
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 2.3e-10 70.5 91 45.1
Actinidia16726 Actinidia chinensis HOM05D004223 ORTHO05D004792 5.7e-09 65.9 46 69.6


User provided reference genes

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