Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 2.0e-47 192.2 102 100.0
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 3.8e-27 124.8 88 72.7
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 1.8e-24 115.9 102 61.8
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.8e-24 115.9 95 66.3
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 2.3e-24 115.5 118 61.9
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 3.0e-24 115.2 102 60.8
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 3.4e-23 111.7 114 57.9
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 3.4e-23 111.7 104 61.5
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 9.8e-23 110.2 109 61.5
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.7e-22 109.4 114 59.6
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 6.3e-22 107.5 101 59.4
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.5e-20 101.7 102 57.8
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 1.7e-19 99.4 93 55.9
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 5.0e-19 97.8 113 55.8
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.9e-18 95.9 104 56.7
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 3.3e-18 95.1 87 57.5
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.2e-17 93.2 100 60.0
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.8e-17 92.0 108 53.7
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.7e-17 91.3 94 55.3
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 6.1e-17 90.9 102 50.0
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 6.1e-17 90.9 112 52.7
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 6.1e-17 90.9 101 51.5
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.8e-16 89.4 112 51.8
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 4.0e-16 88.2 80 60.0
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 5.2e-16 87.8 101 53.5
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 6.8e-16 87.4 84 48.8
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.2e-15 86.7 100 49.0
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.0e-15 85.9 99 50.5
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.4e-15 84.7 99 50.5
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 4.4e-15 84.7 100 47.0
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 5.8e-15 84.3 101 52.5
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 5.8e-15 84.3 87 49.4
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 7.5e-15 84.0 91 56.0
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 7.5e-15 84.0 90 52.2
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 9.8e-15 83.6 99 49.5
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 9.8e-15 83.6 96 50.0
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.7e-14 82.8 90 46.7
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 2.9e-14 82.0 104 49.0
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 3.7e-14 81.6 74 58.1
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 3.7e-14 81.6 84 58.3
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 4.9e-14 81.3 80 48.8
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 4.9e-14 81.3 80 48.8
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 8.3e-14 80.5 101 45.5
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.4e-13 79.7 101 46.5
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 4.1e-13 78.2 94 47.9
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 7.0e-13 77.4 98 44.9
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 9.2e-13 77.0 110 43.6
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.2e-12 76.6 95 46.3
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 1.2e-12 76.6 81 51.9
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 2.0e-12 75.9 99 44.4
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 2.0e-12 75.9 87 51.7
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.7e-12 75.5 74 51.4
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 3.5e-12 75.1 94 44.7
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 3.5e-12 75.1 98 49.0
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.5e-12 75.1 105 46.7
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 3.5e-12 75.1 76 51.3
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.6e-12 74.7 62 58.1
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 4.6e-12 74.7 79 50.6
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 4.6e-12 74.7 87 48.3
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 7.8e-12 73.9 104 45.2
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 7.8e-12 73.9 83 44.6
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.0e-11 73.6 84 48.8
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.0e-11 73.6 88 46.6
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 1.3e-11 73.2 88 45.5
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.7e-11 72.8 88 50.0
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.7e-11 72.8 91 46.2
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.7e-11 72.8 85 49.4
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 2.3e-11 72.4 95 44.2
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 2.3e-11 72.4 95 44.2
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.3e-11 72.4 83 50.6
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 2.3e-11 72.4 80 47.5
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 3.9e-11 71.6 75 52.0
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 5.0e-11 71.2 122 39.3
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 5.0e-11 71.2 76 47.4
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 5.0e-11 71.2 86 50.0
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 6.6e-11 70.9 87 49.4
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 6.6e-11 70.9 85 49.4
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.1e-10 70.1 85 45.9
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.1e-10 70.1 79 44.3
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.1e-10 70.1 75 50.7
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-10 70.1 93 45.2
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.5e-10 69.7 88 43.2
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.5e-10 69.7 96 42.7
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.5e-10 69.7 91 47.3
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 1.9e-10 69.3 89 44.9
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.9e-10 69.3 107 42.1
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 1.9e-10 69.3 85 47.1
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 2.5e-10 68.9 93 44.1
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 2.5e-10 68.9 58 58.6
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 3.3e-10 68.6 96 41.7
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 3.3e-10 68.6 100 39.0
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 3.3e-10 68.6 91 44.0
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.3e-10 68.6 97 50.5
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 3.3e-10 68.6 102 43.1
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.3e-10 68.2 94 46.8
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 4.3e-10 68.2 94 46.8
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.6e-10 67.8 94 45.7
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 7.3e-10 67.4 100 39.0
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 7.3e-10 67.4 103 43.7
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 9.5e-10 67.0 68 48.5
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 9.5e-10 67.0 74 48.6
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.2e-09 66.6 77 49.4
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 1.2e-09 66.6 72 52.8
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.2e-09 66.6 96 44.8
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.2e-09 66.6 97 49.5
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.2e-09 66.6 103 36.9
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.1e-09 65.9 104 44.2
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 2.1e-09 65.9 96 47.9
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.1e-09 65.9 84 50.0
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.6e-09 65.1 94 45.7
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 3.6e-09 65.1 86 46.5
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 4.7e-09 64.7 80 47.5
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 4.7e-09 64.7 88 44.3
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.2e-09 64.3 93 43.0
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 6.2e-09 64.3 79 41.8
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 8.0e-09 63.9 81 44.4
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 8.0e-09 63.9 83 45.8
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 1.1e-08 63.5 80 47.5
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.1e-08 63.5 76 50.0
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.1e-08 63.5 74 47.3
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.8e-08 62.8 76 50.0
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.8e-08 62.8 76 50.0
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.8e-08 62.8 68 51.5
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 1.8e-08 62.8 79 46.8
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.3e-08 62.4 56 53.6
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 2.3e-08 62.4 102 41.2
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.1e-08 62.0 98 44.9
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 3.1e-08 62.0 96 42.7
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.0e-08 61.6 99 42.4
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 4.0e-08 61.6 75 44.0
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 5.2e-08 61.2 82 46.3
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 6.8e-08 60.8 91 44.0
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 6.8e-08 60.8 63 50.8
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.5e-07 59.7 80 45.0
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 2.0e-07 59.3 98 40.8
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.6e-07 58.9 79 43.0
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 2.6e-07 58.9 75 50.7
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 2.6e-07 58.9 56 51.8
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.4e-07 58.5 74 44.6
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 4.9e-06 54.7 98 36.7
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 8.3e-06 53.9 59 50.8


User provided reference genes

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