Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 1.3e-106 389.8 210 100.0
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 1.4e-63 246.9 212 73.1
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 4.0e-55 218.8 207 64.7
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 5.4e-52 208.4 211 64.9
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 9.3e-52 207.6 211 62.6
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 2.1e-51 206.5 211 64.9
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 1.9e-49 199.9 210 60.0
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 2.4e-47 193.0 210 61.4
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 6.9e-47 191.4 210 59.5
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 7.6e-46 188.0 209 57.9
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.3e-45 187.2 211 56.4
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.3e-45 187.2 211 56.4
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.3e-45 187.2 196 64.8
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 2.2e-45 186.4 212 62.3
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.4e-45 184.9 211 56.4
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.4e-45 184.9 211 56.4
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.4e-45 184.5 209 57.4
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 3.2e-44 182.6 202 60.9
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 3.2e-44 182.6 200 57.0
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.2e-44 182.2 209 59.3
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 4.2e-44 182.2 209 57.9
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 5.4e-44 181.8 210 57.6
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 5.4e-44 181.8 209 56.9
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 9.3e-44 181.0 211 58.8
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.8e-42 176.8 210 56.7
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 2.3e-42 176.4 210 53.8
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 8.7e-42 174.5 210 56.7
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 8.7e-42 174.5 209 56.5
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 8.7e-42 174.5 209 56.9
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.5e-41 173.7 214 60.7
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 3.3e-41 172.6 210 57.1
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 3.3e-41 172.6 209 56.5
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 3.3e-41 172.6 209 58.4
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.6e-40 170.2 199 58.3
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 3.7e-40 169.1 211 57.3
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 4.8e-40 168.7 211 50.7
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 6.2e-40 168.3 210 57.1
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 1.8e-39 166.8 212 55.2
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 1.8e-39 166.8 212 55.2
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.6e-38 162.9 204 55.4
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 4.5e-38 162.2 204 54.9
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 1.0e-37 161.0 210 54.8
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.7e-37 160.2 207 54.6
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.2e-37 159.8 211 52.6
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.9e-37 159.5 212 51.9
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 6.5e-37 158.3 210 53.3
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 6.5e-37 158.3 210 53.3
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 6.5e-37 158.3 206 52.4
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 8.4e-37 157.9 209 53.6
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.5e-36 156.4 208 52.4
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 4.2e-36 155.6 212 51.4
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 5.5e-36 155.2 212 54.7
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 1.2e-35 154.1 210 53.3
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.7e-35 152.9 209 52.6
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.5e-35 152.5 209 48.8
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 4.6e-35 152.1 209 52.2
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 3.9e-34 149.1 209 52.2
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.9e-34 149.1 211 52.1
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.5e-33 147.1 212 52.8
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 4.3e-33 145.6 210 51.9
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 5.7e-33 145.2 209 51.2
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 2.1e-32 143.3 209 49.3
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.8e-32 142.9 210 51.4
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 3.7e-32 142.5 209 53.6
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 3.7e-32 142.5 204 50.5
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.8e-32 142.1 210 51.4
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 4.8e-32 142.1 210 51.4
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 8.2e-32 141.4 185 53.5
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.4e-31 140.6 209 50.7
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.4e-31 140.6 179 52.0
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.8e-31 140.2 207 51.7
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.4e-31 139.8 210 48.1
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.2e-30 137.5 197 47.2
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 1.5e-30 137.1 197 53.8
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 1.5e-30 137.1 210 47.6
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 1.5e-30 137.1 206 47.6
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 2.0e-30 136.7 209 46.9
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.6e-30 136.3 195 47.7
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 5.8e-30 135.2 196 52.6
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.0e-29 134.4 211 51.2
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 1.0e-29 134.4 209 46.4
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 3.8e-29 132.5 215 47.0
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.8e-29 132.5 210 50.5
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.8e-29 132.5 210 50.5
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 5.0e-29 132.1 207 48.8
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.9e-28 130.2 209 45.9
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.9e-28 130.2 209 45.9
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.9e-28 130.2 209 46.4
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 3.2e-28 129.4 208 45.7
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 3.2e-28 129.4 209 46.9
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.6e-27 127.1 209 44.5
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.7e-27 126.3 207 47.3
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.5e-27 125.9 204 50.5
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 7.9e-27 124.8 209 45.0
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.0e-26 124.4 204 50.5
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.8e-26 123.6 204 45.6
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 3.9e-26 122.5 197 44.2
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 5.1e-26 122.1 197 43.7
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 6.7e-26 121.7 115 67.8
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 1.1e-25 120.9 145 55.2
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-25 120.9 205 49.3
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 1.5e-25 120.6 211 45.5
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.9e-25 120.2 216 45.8
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.9e-25 120.2 209 46.9
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 2.5e-25 119.8 210 43.8
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 3.3e-25 119.4 209 44.5
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.3e-25 119.4 210 43.3
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.3e-25 119.4 210 43.3
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 4.3e-25 119.0 195 48.2
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 5.7e-25 118.6 199 46.2
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 7.4e-25 118.2 210 42.9
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 7.4e-25 118.2 195 46.7
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 7.4e-25 118.2 212 45.3
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 1.6e-24 117.1 211 45.5
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 2.8e-24 116.3 213 44.6
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.8e-24 116.3 202 45.5
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 3.7e-24 115.9 197 43.1
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.8e-24 115.5 195 40.5
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 4.8e-24 115.5 199 43.7
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.8e-24 115.5 210 42.4
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 4.8e-24 115.5 211 44.5
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 8.2e-24 114.8 208 43.8
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 1.1e-23 114.4 97 80.4
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 1.4e-23 114.0 191 50.8
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 2.4e-23 113.2 204 45.6
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 3.1e-23 112.8 184 44.6
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 3.1e-23 112.8 195 41.0
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 3.1e-23 112.8 210 42.4
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.1e-23 112.8 210 42.4
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.5e-22 110.5 207 42.0
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.0e-22 110.2 208 43.8
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.0e-22 110.2 187 46.5
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.6e-22 109.8 201 45.8
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.6e-22 109.8 190 46.8
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 3.4e-22 109.4 150 46.7
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 7.7e-22 108.2 189 48.7
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 7.7e-22 108.2 201 42.8
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.3e-21 107.5 109 62.4
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 1.7e-21 107.1 210 42.9
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.7e-21 107.1 263 36.5
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 1.7e-21 107.1 206 41.7
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 6.5e-21 105.1 196 46.9
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 1.1e-20 104.4 98 67.3
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 1.1e-20 104.4 210 45.7
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 1.1e-20 104.4 98 67.3
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 1.9e-20 103.6 204 45.1
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.9e-20 103.6 140 52.1
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 2.5e-20 103.2 119 53.8
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 4.2e-20 102.4 196 45.4
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.2e-19 100.9 188 44.1
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.2e-19 100.9 196 45.4
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 2.7e-19 99.8 261 35.6
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 3.6e-19 99.4 194 43.8
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 3.6e-19 99.4 217 40.1
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 4.6e-19 99.0 106 67.0
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 4.6e-19 99.0 196 44.4
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 1.0e-18 97.8 191 44.5
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 8.8e-18 94.7 200 44.0
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 5.7e-17 92.0 195 42.1
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 9.7e-17 91.3 85 63.5
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 1.3e-16 90.9 93 68.8
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 1.1e-15 87.8 226 41.6
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 1.4e-15 87.4 202 40.1
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 4.1e-15 85.9 72 69.4
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 6.9e-15 85.1 201 40.3
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 6.9e-15 85.1 210 41.0
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 1.5e-14 84.0 110 59.1
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 5.9e-14 82.0 201 39.8
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 5.9e-14 82.0 213 41.8
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 5.9e-14 82.0 194 37.6
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 7.7e-14 81.6 210 34.8
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 1.3e-13 80.9 206 41.7
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 2.9e-13 79.7 217 38.7
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 3.8e-13 79.3 116 56.0
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 5.0e-13 79.0 206 38.3
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.4e-12 77.4 195 38.5
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 1.9e-12 77.0 220 39.1
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 3.6e-11 72.8 132 37.1
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 4.7e-11 72.4 214 37.9
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 6.1e-11 72.0 203 38.9
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 1.1e-09 67.8 220 38.2
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 5.7e-09 65.5 51 76.5
Lj8C18T8 Lonicera japonica HOM05D002831 ORTHO05D004341 1.8e-07 60.5 50 78.0
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.8e-07 60.5 137 37.2
Pp3c26_7830 Physcomitrium patens HOM05D040812 ORTHO05D031180 2.6e-06 56.6 63 61.9


User provided reference genes

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