Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 8.1e-120 434.1 251 100.0
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.2e-30 137.9 216 44.4
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.6e-27 127.5 218 41.7
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 5.7e-25 119.0 131 56.5
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 2.2e-24 117.1 146 54.1
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.4e-23 114.4 146 48.6
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.9e-20 104.0 108 53.7
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 2.8e-19 100.1 102 54.9
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.8e-19 100.1 113 48.7
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.0e-18 98.2 113 47.8
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 4.0e-18 96.3 105 51.4
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.0e-17 94.0 128 48.4
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 9.8e-17 91.7 119 50.4
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 8.3e-16 88.6 102 49.0
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 8.3e-16 88.6 89 55.1
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 3.2e-15 86.7 70 61.4
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 4.1e-15 86.3 146 42.5
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 9.2e-15 85.1 125 45.6
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.2e-14 84.7 70 60.0
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.2e-14 84.7 70 60.0
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.0e-14 84.0 70 60.0
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.0e-14 84.0 76 56.6
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.0e-14 84.0 70 58.6
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 2.7e-14 83.6 104 48.1
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 3.5e-14 83.2 91 49.5
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 3.5e-14 83.2 111 45.9
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.5e-14 83.2 70 58.6
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 4.6e-14 82.8 94 47.9
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 4.6e-14 82.8 107 54.2
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 6.0e-14 82.4 91 48.4
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 6.0e-14 82.4 91 48.4
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 6.0e-14 82.4 91 48.4
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 6.0e-14 82.4 91 48.4
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 6.0e-14 82.4 91 47.3
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 7.8e-14 82.0 76 56.6
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 7.8e-14 82.0 101 49.5
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 7.8e-14 82.0 116 47.4
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 1.0e-13 81.6 70 57.1
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.0e-13 81.6 70 57.1
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 1.0e-13 81.6 70 57.1
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.3e-13 81.3 97 50.5
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.3e-13 81.3 70 57.1
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.3e-13 81.3 75 58.7
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.3e-13 81.3 84 51.2
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.7e-13 80.9 68 58.8
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-13 80.9 108 42.6
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-13 80.9 108 42.6
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-13 80.9 91 48.4
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.3e-13 80.5 101 48.5
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 2.3e-13 80.5 73 61.6
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 3.0e-13 80.1 128 42.2
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 3.9e-13 79.7 70 55.7
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 3.9e-13 79.7 108 49.1
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 3.9e-13 79.7 71 60.6
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.9e-13 79.7 92 47.8
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 8.6e-13 78.6 86 50.0
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 8.6e-13 78.6 86 50.0
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.1e-12 78.2 70 61.4
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 1.5e-12 77.8 71 54.9
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.9e-12 77.4 69 56.5
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.9e-12 77.4 71 54.9
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 1.9e-12 77.4 71 54.9
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.9e-12 77.4 71 52.1
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.9e-12 77.4 74 59.5
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.9e-12 77.4 80 52.5
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.5e-12 77.0 71 54.9
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 2.5e-12 77.0 70 52.9
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.5e-12 77.0 140 38.6
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 3.3e-12 76.6 71 53.5
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 3.3e-12 76.6 71 53.5
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.3e-12 76.3 71 54.9
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.3e-12 76.3 72 59.7
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 5.6e-12 75.9 73 53.4
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 7.3e-12 75.5 72 56.9
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 9.5e-12 75.1 89 47.2
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 9.5e-12 75.1 89 47.2
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 9.5e-12 75.1 89 46.1
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 9.5e-12 75.1 70 55.7
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 9.5e-12 75.1 70 58.6
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.2e-11 74.7 71 53.5
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.2e-11 74.7 83 49.4
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.2e-11 74.7 83 49.4
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.2e-11 74.7 83 49.4
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 1.2e-11 74.7 73 54.8
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.2e-11 74.7 82 48.8
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 1.6e-11 74.3 82 47.6
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.6e-11 74.3 89 46.1
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 2.8e-11 73.6 114 43.9
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 3.6e-11 73.2 73 54.8
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.6e-11 73.2 76 53.9
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 4.7e-11 72.8 92 52.2
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 4.7e-11 72.8 94 44.7
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 4.7e-11 72.8 68 57.4
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 4.7e-11 72.8 75 52.0
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 6.2e-11 72.4 66 54.5
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 6.2e-11 72.4 103 42.7
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.1e-10 71.6 99 45.5
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 2.3e-10 70.5 65 53.8
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 2.3e-10 70.5 73 47.9
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.1e-10 70.1 86 53.5
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 3.1e-10 70.1 68 55.9
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 3.1e-10 70.1 105 43.8
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 4.0e-10 69.7 71 50.7
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 4.0e-10 69.7 68 54.4
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 4.0e-10 69.7 70 52.9
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.2e-10 69.3 67 56.7
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 5.2e-10 69.3 108 44.4
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 6.8e-10 68.9 70 55.7
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 8.9e-10 68.6 69 58.0
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.2e-09 68.2 68 54.4
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.2e-09 68.2 66 56.1
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 1.2e-09 68.2 66 57.6
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 1.2e-09 68.2 66 57.6
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 1.5e-09 67.8 71 53.5
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.0e-09 67.4 73 52.1
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.6e-09 67.0 66 56.1
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 3.4e-09 66.6 85 48.2
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.8e-09 65.9 88 43.2
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 9.8e-09 65.1 83 53.0
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 9.8e-09 65.1 70 48.6
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 9.8e-09 65.1 73 49.3
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.3e-08 64.7 104 43.3
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.7e-08 64.3 71 50.7
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.7e-08 64.3 109 40.4
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.7e-08 64.3 104 43.3
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.7e-08 64.3 102 43.1
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.7e-08 64.3 104 43.3
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.2e-08 63.9 71 53.5
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.2e-08 63.9 73 49.3
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.2e-08 63.9 70 48.6
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 2.2e-08 63.9 71 47.9
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 2.9e-08 63.5 104 40.4
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 2.9e-08 63.5 70 51.4
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 3.7e-08 63.2 68 51.5
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 4.9e-08 62.8 71 53.5
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 4.9e-08 62.8 65 56.9
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.9e-08 62.8 62 50.0
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 1.1e-07 61.6 71 45.1
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.1e-07 61.6 88 42.0
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 1.4e-07 61.2 93 43.0
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.4e-07 61.2 97 42.3
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.4e-07 61.2 78 47.4
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 1.9e-07 60.8 73 43.8
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 1.9e-07 60.8 73 43.8
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.9e-07 60.8 92 40.2
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 2.4e-07 60.5 106 41.5
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.4e-07 60.5 109 40.4
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 2.4e-07 60.5 76 42.1
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 3.2e-07 60.1 68 47.1
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 4.1e-07 59.7 68 47.1
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 4.1e-07 59.7 68 48.5
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 4.1e-07 59.7 87 41.4
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 7.1e-07 58.9 75 45.3
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 7.1e-07 58.9 69 44.9
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 9.2e-07 58.5 69 49.3
MD13G1065600 Malus domestica HOM05D003853 ORTHO05D004171 9.2e-07 58.5 65 49.2
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 9.2e-07 58.5 66 53.0
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.2e-06 58.2 68 50.0
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 1.6e-06 57.8 68 44.1
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.6e-06 57.8 74 51.4
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 2.1e-06 57.4 70 48.6
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.7e-06 57.0 71 52.1
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 2.7e-06 57.0 68 42.6
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 2.7e-06 57.0 70 47.1
SalBow2G0731 Salvia bowleyana HOM05D033521 ORTHO05D004171 6.0e-06 55.8 103 39.8
SalBow2G2016 Salvia bowleyana HOM05D033521 ORTHO05D004171 6.0e-06 55.8 103 39.8


User provided reference genes

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