Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.0e-171 606.7 305 100.0
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.5e-151 539.7 305 87.2
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.5e-151 539.7 305 86.6
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.0e-151 539.3 305 84.6
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 4.3e-151 538.1 305 83.9
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 85.6
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 85.6
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 85.9
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 6.3e-150 534.3 305 84.6
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 8.2e-150 533.9 305 85.2
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 8.2e-150 533.9 305 85.9
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 82.3
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 83.3
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 85.6
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 85.6
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 86.2
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 85.2
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 87.5
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 84.9
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 85.6
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 82.0
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 85.9
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 84.6
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 85.9
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 82.6
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 84.6
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 2.6e-148 528.9 305 84.3
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 86.2
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 86.2
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 83.3
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 5.9e-148 527.7 308 83.8
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 83.0
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 84.3
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 84.9
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.7e-147 526.2 326 81.3
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 82.3
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 82.6
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 82.3
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 8.5e-147 523.9 305 84.6
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 1.1e-146 523.5 305 82.0
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 84.3
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 81.3
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 81.0
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 81.3
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 5.5e-146 521.2 307 81.1
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 82.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 82.3
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 9.4e-146 520.4 301 86.0
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 82.3
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 83.6
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 83.3
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 2.7e-145 518.8 304 83.6
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 83.0
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 80.7
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 83.9
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.0e-144 516.9 303 83.5
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 81.0
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 3.0e-144 515.4 305 82.0
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 80.7
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 80.3
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 2.0e-143 512.7 301 83.7
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 79.3
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 79.0
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 79.7
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 81.6
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 4.4e-143 511.5 305 82.3
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 4.4e-143 511.5 305 80.3
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 79.7
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 9.7e-143 510.4 305 79.7
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 2.8e-142 508.8 305 79.3
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 78.4
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 79.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 79.3
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 79.3
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 6.3e-142 507.7 305 79.7
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 8.2e-142 507.3 305 79.3
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 8.2e-142 507.3 305 79.0
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.1e-141 506.9 300 83.3
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 1.1e-141 506.9 307 82.4
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 3.1e-141 505.4 305 78.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 4.1e-141 505.0 305 79.0
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 7.0e-141 504.2 302 82.5
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 3.5e-140 501.9 305 80.7
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.5e-140 501.5 302 79.1
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.1e-138 496.9 305 79.3
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 7.2e-138 494.2 330 73.3
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 6.1e-137 491.1 372 66.9
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.0e-136 488.8 307 75.6
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 6.7e-136 487.6 305 78.4
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.5e-135 486.5 307 74.9
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 2.0e-135 486.1 307 76.5
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.0e-135 486.1 305 78.0
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.6e-135 485.7 303 75.2
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.3e-135 485.3 304 77.6
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 3.3e-135 485.3 305 76.7
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 7.5e-135 484.2 307 76.2
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 2.2e-134 482.6 306 75.2
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 2.2e-134 482.6 306 75.2
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 2.2e-134 482.6 306 75.2
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 2.2e-134 482.6 307 74.6
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.4e-133 479.2 306 74.8
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 5.3e-133 478.0 305 74.8
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 9.1e-133 477.2 305 74.4
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 8.5e-131 470.7 303 76.2
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.2e-129 466.8 388 64.2
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 1.6e-129 466.5 304 75.0
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 1.6e-129 466.5 304 75.0
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 2.7e-129 465.7 305 75.7
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 3.6e-129 465.3 304 74.7
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 4.0e-128 461.8 304 74.0
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.1e-125 453.8 300 73.3
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 2.6e-119 432.6 305 72.5
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.4e-119 432.2 304 67.1
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 6.3e-118 427.9 306 66.0
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 5.9e-116 421.4 304 65.5
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 3.8e-115 418.7 303 66.7
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.7e-110 403.3 246 82.9
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 9.2e-109 397.5 235 83.4
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 3.6e-105 385.6 303 61.7
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 7.5e-103 377.9 225 80.0
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 3.2e-101 372.5 311 60.1
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 7.3e-98 361.3 225 82.2
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 6.4e-94 348.2 228 77.6
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 8.6e-91 337.8 207 77.3
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.9e-69 266.9 181 73.5
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 2.7e-68 263.1 160 78.1
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 1.5e-63 247.3 143 81.1
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.3e-62 244.2 149 76.5
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 2.1e-60 236.9 154 73.4
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 9.0e-56 221.5 153 68.6
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 3.5e-52 209.5 300 45.3
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.8e-40 170.6 125 65.6
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 4.1e-40 169.5 299 36.5
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.5e-39 167.5 141 56.0
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 4.5e-39 166.0 80 92.5
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 6.5e-38 162.2 307 35.5
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 8.5e-38 161.8 205 48.3
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.2e-36 157.9 83 84.3
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.6e-36 157.5 79 87.3
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 2.1e-36 157.1 89 78.7
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 3.0e-35 153.3 80 83.8
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 5.5e-29 132.5 79 78.5
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 4.8e-25 119.4 58 91.4
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 3.5e-23 113.2 82 62.2
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 1.3e-22 111.3 60 83.3
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 9.4e-21 105.1 293 31.7
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 1.2e-20 104.8 64 75.0
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 3.7e-17 93.2 74 74.3
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.0e-11 75.1 254 27.2


User provided reference genes

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