Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 2.6e-104 382.1 195 100.0
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 2.4e-54 216.1 199 59.8
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 2.3e-44 183.0 205 53.7
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.1e-42 176.4 201 51.2
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 8.4e-39 164.5 195 49.2
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.6e-37 160.2 191 52.4
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 2.3e-36 156.4 204 46.1
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 1.4e-33 147.1 186 48.4
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.8e-33 146.7 198 45.5
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 3.1e-33 146.0 182 48.4
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 4.0e-33 145.6 187 49.7
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.2e-33 145.2 206 47.1
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 1.2e-32 144.1 211 46.9
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.2e-32 144.1 206 46.6
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.5e-32 143.7 201 45.8
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.5e-32 143.7 197 48.7
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 1.5e-32 143.7 196 49.5
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 2.0e-32 143.3 205 46.3
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 3.4e-32 142.5 195 49.7
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.4e-32 142.1 193 48.2
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 4.4e-32 142.1 193 46.1
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 5.8e-32 141.7 199 47.2
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 7.6e-32 141.4 204 46.1
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.3e-31 140.6 204 45.6
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 2.2e-31 139.8 184 49.5
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 2.9e-31 139.4 187 47.6
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 2.9e-31 139.4 192 50.0
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 3.8e-31 139.0 187 47.6
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 3.8e-31 139.0 210 44.3
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 4.9e-31 138.7 187 46.5
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 1.9e-30 136.7 197 41.6
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 7.1e-30 134.8 185 45.4
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 9.3e-30 134.4 207 42.0
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.2e-29 134.0 190 46.8
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.6e-29 133.7 199 44.7
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.1e-29 133.3 189 42.3
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.7e-29 132.9 163 47.2
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 3.5e-29 132.5 170 51.2
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.0e-28 131.0 197 43.7
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.3e-28 130.6 191 43.5
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 1.3e-28 130.6 204 43.6
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 3.0e-28 129.4 192 43.2
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 5.1e-28 128.6 189 45.0
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 5.1e-28 128.6 182 44.0
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 6.6e-28 128.3 202 41.1
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.6e-28 128.3 198 44.4
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 8.7e-28 127.9 194 41.2
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.3e-27 125.9 193 40.9
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.3e-27 125.9 194 42.8
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.3e-27 124.8 184 42.9
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 7.3e-27 124.8 179 42.5
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 7.3e-27 124.8 180 45.0
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 9.6e-27 124.4 184 42.9
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.8e-26 122.9 202 42.6
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 6.2e-26 121.7 183 43.2
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 6.2e-26 121.7 165 47.3
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 8.1e-26 121.3 203 39.4
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.4e-25 119.8 173 45.7
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.0e-25 119.0 192 47.4
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 5.3e-25 118.6 197 38.1
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 5.3e-25 118.6 195 45.1
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 6.9e-25 118.2 186 39.8
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 9.0e-25 117.9 179 40.8
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.2e-24 117.5 184 43.5
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.2e-24 117.5 194 43.3
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 1.2e-24 117.5 202 41.1
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.5e-24 117.1 200 42.0
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.0e-24 116.7 204 41.7
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.6e-24 116.3 174 43.7
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.6e-24 116.3 174 43.7
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 5.8e-24 115.2 206 41.7
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 1.7e-23 113.6 159 48.4
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.9e-23 112.8 202 40.6
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 4.9e-23 112.1 187 46.0
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 4.9e-23 112.1 166 43.4
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 6.4e-23 111.7 170 41.2
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 6.4e-23 111.7 207 38.2
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 6.4e-23 111.7 170 45.9
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 6.4e-23 111.7 163 40.5
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.2e-22 109.4 174 43.7
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 4.2e-22 109.0 199 38.7
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 5.4e-22 108.6 191 39.3
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 9.3e-22 107.8 179 40.2
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 9.3e-22 107.8 186 42.5
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 3.5e-21 105.9 197 39.1
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 3.5e-21 105.9 203 36.9
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 3.5e-21 105.9 177 37.3
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 4.6e-21 105.5 187 42.8
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 6.0e-21 105.1 141 44.0
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 7.9e-21 104.8 191 41.4
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 7.9e-21 104.8 180 41.1
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 1.0e-20 104.4 185 41.6
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 1.8e-20 103.6 182 42.3
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 3.0e-20 102.8 176 40.3
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 3.0e-20 102.8 146 45.9
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 3.9e-20 102.4 175 38.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 6.7e-20 101.7 169 39.1
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 6.7e-20 101.7 169 39.1
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 4.3e-19 99.0 92 56.5
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 4.3e-19 99.0 179 37.4
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 9.6e-19 97.8 170 38.2
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.3e-18 97.4 188 39.4
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.6e-18 97.1 180 36.1
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 2.1e-18 96.7 178 40.4
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 2.8e-18 96.3 168 38.7
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 3.7e-18 95.9 167 39.5
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 3.7e-18 95.9 172 43.6
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.4e-17 93.2 186 36.6
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 2.4e-17 93.2 166 37.3
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 3.1e-17 92.8 158 40.5
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 5.3e-17 92.0 178 36.0
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 2.0e-16 90.1 160 40.0
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 3.4e-16 89.4 184 36.4
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 5.8e-16 88.6 194 34.5
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.3e-15 87.4 173 35.3
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.7e-15 87.0 173 35.8
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 1.7e-15 87.0 185 36.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.7e-15 87.0 179 34.1
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 2.9e-15 86.3 143 44.1
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 3.8e-15 85.9 175 35.4
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 3.8e-15 85.9 181 35.9
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 4.9e-15 85.5 190 36.3
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 8.4e-15 84.7 188 36.2
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.1e-14 84.3 189 36.5
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-14 84.0 173 34.7
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.9e-14 83.6 173 34.1
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 1.9e-14 83.6 180 35.0
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.9e-14 83.6 173 34.1
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 4.2e-14 82.4 65 61.5
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 5.5e-14 82.0 180 34.4
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 5.5e-14 82.0 186 34.4
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.2e-13 80.9 186 34.4
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.2e-13 80.9 185 34.6
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.6e-13 80.5 184 34.2
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 1.6e-13 80.5 186 34.4
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 1.6e-13 80.5 186 34.4
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 1.6e-13 80.5 151 39.1
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 2.1e-13 80.1 162 37.0
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 2.7e-13 79.7 193 32.6
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 3.5e-13 79.3 178 36.0
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 3.5e-13 79.3 181 34.8
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 6.0e-13 78.6 178 33.7
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 6.0e-13 78.6 175 33.7
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 2.5e-11 73.2 192 32.3
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 3.3e-11 72.8 186 33.9
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 4.3e-11 72.4 126 42.9
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.4e-09 66.6 89 41.6
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 3.1e-09 66.2 64 57.8
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 6.9e-09 65.1 190 32.1
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 9.0e-09 64.7 173 31.8
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.5e-08 63.9 162 35.2
Sed0009826 Sechium edule HOM05D004361 ORTHO05D004706 2.9e-07 59.7 159 29.6
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 3.8e-07 59.3 218 27.1
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 6.5e-07 58.5 47 61.7
MBI06_g19436_MAGBIO Magnolia biondii HOM05D009517 ORTHO05D011612 1.1e-06 57.8 166 30.1
Potri.008G145000 Populus trichocarpa HOM05D009517 ORTHO05D011612 1.1e-06 57.8 166 31.3
MD13G1009000 Malus domestica HOM05D009517 ORTHO05D011612 1.9e-06 57.0 165 32.1
FAN07G2507 Fragaria x ananassa HOM05D009517 ORTHO05D011612 2.5e-06 56.6 165 32.1
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 3.2e-06 56.2 153 30.7
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 4.2e-06 55.8 159 30.2
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 4.2e-06 55.8 48 52.1
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 5.5e-06 55.5 93 38.7


User provided reference genes

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