Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 3.1e-72 275.0 137 100.0
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 2.7e-36 155.6 145 61.4
SGA_v2.0_scaffold7G03722 Striga asiatica HOM05D026462 ORTHO05D004423 1.1e-21 107.1 137 48.2
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 3.5e-15 85.5 138 44.9
Oeu057040.1 Olea europaea HOM05D026462 ORTHO05D049473 1.1e-13 80.5 110 45.5
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 1.5e-13 80.1 137 42.3
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 2.7e-12 75.9 145 42.8
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 6.1e-12 74.7 145 40.7
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 8.0e-12 74.3 130 41.5
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.4e-11 73.6 124 42.7
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 1.8e-11 73.2 132 40.2
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.3e-11 72.8 137 44.5
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 3.0e-11 72.4 124 44.4
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 3.0e-11 72.4 123 43.9
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 3.0e-11 72.4 123 43.9
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 3.0e-11 72.4 150 38.0
Oeu030108.1 Olea europaea HOM05D026462 ORTHO05D049473 3.0e-11 72.4 110 46.4
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 3.0e-11 72.4 141 39.7
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 5.2e-11 71.6 145 42.1
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 5.2e-11 71.6 130 43.1
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.8e-11 71.2 124 41.9
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 8.8e-11 70.9 138 44.9
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 8.8e-11 70.9 149 36.2
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 8.8e-11 70.9 128 39.1
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 8.8e-11 70.9 145 38.6
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 8.8e-11 70.9 144 40.3
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 8.8e-11 70.9 157 36.3
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 1.5e-10 70.1 144 38.2
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.5e-10 70.1 128 42.2
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.0e-10 69.7 124 41.1
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 2.0e-10 69.7 141 39.7
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 2.0e-10 69.7 144 38.2
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.6e-10 69.3 138 39.9
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 2.6e-10 69.3 141 39.7
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 3.4e-10 68.9 156 39.1
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 5.7e-10 68.2 138 39.1
Solyc11g012520.1 Solanum lycopersicum HOM05D018828 ORTHO05D004423 5.7e-10 68.2 138 40.6
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 5.7e-10 68.2 139 41.0
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 7.5e-10 67.8 150 39.3
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 7.5e-10 67.8 140 40.0
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 7.5e-10 67.8 128 38.3
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 9.8e-10 67.4 52 69.2
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 9.8e-10 67.4 137 40.1
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 9.8e-10 67.4 151 38.4
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 1.3e-09 67.0 142 34.5
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 1.7e-09 66.6 93 46.2
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.7e-09 66.6 141 39.0
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 2.2e-09 66.2 166 40.4
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.8e-09 65.9 140 36.4
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 2.8e-09 65.9 128 35.9
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.8e-09 65.9 144 40.3
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.7e-09 65.5 153 37.9
Migut.M01424 Erythranthe guttata HOM05D018828 ORTHO05D004423 3.7e-09 65.5 147 40.8
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 4.8e-09 65.1 151 35.8
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 4.8e-09 65.1 144 38.2
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 6.3e-09 64.7 128 41.4
Eucgr.A01045 Eucalyptus grandis HOM05D004793 ORTHO05D004423 8.3e-09 64.3 135 37.8
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 8.3e-09 64.3 140 38.6
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 8.3e-09 64.3 159 34.6
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.1e-08 63.9 137 39.4
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 1.1e-08 63.9 137 40.9
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.1e-08 63.9 132 37.9
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.1e-08 63.9 138 34.8
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 1.1e-08 63.9 138 38.4
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 1.1e-08 63.9 156 37.2
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 1.8e-08 63.2 136 36.8
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 2.4e-08 62.8 143 39.2
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 2.4e-08 62.8 90 46.7
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 2.4e-08 62.8 132 37.9
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 2.4e-08 62.8 142 40.8
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 3.1e-08 62.4 124 37.9
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 3.1e-08 62.4 138 40.6
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 3.1e-08 62.4 125 39.2
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 4.1e-08 62.0 143 35.7
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 4.1e-08 62.0 160 35.0
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 5.4e-08 61.6 145 37.9
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.0e-08 61.2 128 41.4
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 7.0e-08 61.2 128 41.4
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 1.2e-07 60.5 138 37.7
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 1.2e-07 60.5 124 38.7
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 1.6e-07 60.1 137 39.4
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 1.6e-07 60.1 142 37.3
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.0e-07 59.7 137 37.2
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.0e-07 59.7 137 37.2
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.0e-07 59.7 128 40.6
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.0e-07 59.7 88 43.2
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.7e-07 59.3 137 36.5
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.7e-07 59.3 96 45.8
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 2.7e-07 59.3 140 35.7
CAN.G696.14 Capsicum annuum HOM05D018828 ORTHO05D004423 4.5e-07 58.5 138 36.2
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 5.9e-07 58.2 155 32.3
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 7.7e-07 57.8 136 36.0
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.0e-06 57.4 55 54.5
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 1.3e-06 57.0 155 34.8
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 1.7e-06 56.6 159 34.6
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.3e-06 56.2 44 68.2
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 2.9e-06 55.8 104 36.5
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 2.9e-06 55.8 161 31.7
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 2.9e-06 55.8 140 32.9
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 3.8e-06 55.5 87 46.0
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 3.8e-06 55.5 87 46.0
Nitab4.5_0000143g0030 Nicotiana tabacum HOM05D018828 ORTHO05D004423 3.8e-06 55.5 112 36.6
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 5.0e-06 55.1 130 35.4
Migut.H01618 Erythranthe guttata HOM05D026462 ORTHO05D004423 5.0e-06 55.1 148 36.5
Haze_12687 Corylus avellana HOM05D004793 ORTHO05D004423 6.6e-06 54.7 60 51.7
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 8.6e-06 54.3 126 38.9
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 8.6e-06 54.3 143 35.0


User provided reference genes

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