Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.0e-111 406.8 203 100.0
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 4.9e-98 361.3 204 87.3
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 3.7e-90 335.1 204 80.9
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 5.0e-87 324.7 202 80.2
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.9e-86 322.8 204 80.4
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 7.3e-86 320.9 204 77.9
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 7.3e-86 320.9 205 78.5
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.2e-85 320.1 205 78.0
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.2e-85 320.1 204 79.4
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 3.6e-85 318.5 194 80.9
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 8.0e-85 317.4 205 77.6
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.3e-84 315.8 204 77.0
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 5.2e-84 314.7 205 77.6
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.4e-83 312.0 205 77.1
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 4.4e-83 311.6 205 76.6
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.8e-83 311.2 204 75.0
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 7.5e-83 310.8 206 75.7
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 1.3e-82 310.1 206 75.2
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.2e-82 309.3 206 75.2
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 2.9e-82 308.9 204 77.0
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.9e-82 308.1 204 74.5
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.1e-81 305.1 204 72.1
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 7.0e-81 304.3 204 72.1
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.2e-80 303.5 205 73.2
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 1.2e-80 303.5 203 71.9
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.5e-80 302.0 204 72.1
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 3.5e-80 302.0 205 74.6
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 4.6e-80 301.6 204 71.1
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 6.0e-80 301.2 204 75.5
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 6.0e-80 301.2 204 71.1
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 6.0e-80 301.2 207 73.9
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.0e-79 300.4 203 71.9
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.0e-79 300.4 204 71.6
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.7e-79 299.7 203 72.9
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 3.0e-79 298.9 196 78.1
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.0e-79 298.1 203 73.4
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.3e-78 295.4 203 70.0
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 4.3e-78 295.0 207 72.0
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 5.6e-78 294.7 203 69.5
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 9.5e-78 293.9 203 72.9
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.6e-77 293.1 202 69.3
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 2.1e-77 292.7 203 70.4
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 6.2e-77 291.2 227 66.1
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 6.2e-77 291.2 203 69.5
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 6.2e-77 291.2 203 69.5
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 8.1e-77 290.8 205 70.7
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 1.8e-76 289.7 204 72.5
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 5.2e-76 288.1 204 70.6
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 5.2e-76 288.1 204 71.6
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 5.2e-76 288.1 203 69.0
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 8.9e-76 287.3 203 71.9
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.2e-75 287.0 203 68.5
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 2.0e-75 286.2 203 70.9
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 7.5e-75 284.3 205 70.2
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 1.7e-74 283.1 205 69.8
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.7e-74 283.1 205 69.3
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 2.9e-74 282.3 209 69.4
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.7e-74 282.0 205 69.3
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.1e-73 280.4 198 70.2
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.4e-73 280.0 205 68.8
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.4e-73 279.3 202 68.8
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 2.4e-73 279.3 198 70.2
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 9.2e-73 277.3 204 66.7
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 1.2e-72 276.9 198 70.2
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 1.6e-72 276.6 203 68.5
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 2.1e-72 276.2 203 68.5
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 2.1e-72 276.2 203 68.5
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 2.7e-72 275.8 203 67.5
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 3.5e-72 275.4 202 69.3
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 3.5e-72 275.4 203 67.5
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.5e-72 275.4 202 70.3
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 3.5e-72 275.4 205 70.2
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 4.6e-72 275.0 203 68.0
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 6.0e-72 274.6 204 67.2
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 6.0e-72 274.6 202 69.8
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 6.0e-72 274.6 205 68.8
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 7.8e-72 274.2 203 67.5
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.0e-71 273.9 202 67.3
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.0e-71 273.9 202 67.3
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.0e-71 273.9 203 68.0
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 1.0e-71 273.9 198 68.7
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 3.0e-71 272.3 198 68.7
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 3.9e-71 271.9 203 68.0
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 3.9e-71 271.9 205 69.3
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 5.1e-71 271.6 203 67.5
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 6.6e-71 271.2 203 68.0
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 6.6e-71 271.2 203 68.0
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 6.6e-71 271.2 203 67.0
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 6.6e-71 271.2 203 68.0
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 6.6e-71 271.2 205 66.3
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 6.6e-71 271.2 203 67.5
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 8.6e-71 270.8 203 66.0
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 8.6e-71 270.8 203 66.0
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 8.6e-71 270.8 203 68.0
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.1e-70 270.4 203 66.0
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.1e-70 270.4 193 69.9
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 1.5e-70 270.0 203 68.5
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 1.5e-70 270.0 202 67.3
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 1.5e-70 270.0 203 66.5
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.5e-70 270.0 198 69.2
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 2.5e-70 269.2 197 67.5
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 3.3e-70 268.9 199 67.8
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.3e-70 268.5 207 64.3
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 4.3e-70 268.5 205 65.9
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 4.3e-70 268.5 203 66.5
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 5.6e-70 268.1 198 67.2
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 5.6e-70 268.1 256 57.0
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 7.3e-70 267.7 204 65.2
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 2.8e-69 265.8 198 67.7
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.1e-68 263.8 203 68.5
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 8.9e-68 260.8 213 62.4
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.0e-67 259.6 205 62.9
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 7.6e-67 257.7 204 65.2
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.2e-66 256.1 205 65.4
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 7.8e-64 247.7 204 57.8
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.5e-62 243.4 193 65.3
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 4.3e-62 241.9 205 60.0
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 4.2e-57 225.3 207 54.6
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.0e-55 219.2 139 79.1
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.8e-52 209.9 208 51.9
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 9.0e-52 207.6 213 51.6
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 2.2e-50 203.0 208 51.9
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.4e-50 201.1 154 70.1
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.1e-49 200.7 207 51.7
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 9.3e-49 197.6 205 56.6
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 1.1e-46 190.7 145 65.5
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.5e-46 190.3 137 70.1
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.5e-46 190.3 139 67.6
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.2e-40 170.6 148 61.5
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 7.9e-40 167.9 205 45.4
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.3e-39 166.4 177 55.9
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.0e-39 166.0 148 58.8
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.1e-38 164.1 128 64.1
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.9e-25 120.2 191 35.6
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 4.2e-25 119.0 191 39.8
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 2.7e-24 116.3 128 48.4
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.0e-23 112.8 75 66.7
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.7e-23 111.3 136 48.5
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 4.3e-22 109.0 199 37.7
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 7.4e-22 108.2 66 77.3
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 5.3e-20 102.1 99 51.5
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 9.0e-20 101.3 67 71.6
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.8e-15 87.0 69 69.6
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 2.0e-14 83.6 74 62.2
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 4.8e-13 79.0 51 70.6
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 8.5e-10 68.2 63 58.7
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.0e-07 61.2 61 49.2
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.0e-06 57.0 65 49.2
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 4.4e-06 55.8 31 71.0
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.7e-06 55.5 50 60.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.7e-06 55.5 50 60.0


User provided reference genes

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