Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.2e-107 393.3 212 100.0
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 3.8e-77 292.0 209 70.3
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.1e-73 280.4 209 68.4
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 2.8e-72 275.8 209 68.4
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 3.9e-66 255.4 206 65.0
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 4.3e-65 251.9 188 69.7
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.1e-63 247.3 190 65.8
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 7.6e-62 241.1 207 56.5
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.0e-61 240.7 189 76.2
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 3.8e-61 238.8 189 75.7
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 8.4e-61 237.7 188 71.3
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 1.4e-60 236.9 189 74.6
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 1.9e-60 236.5 189 68.8
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.2e-59 233.8 188 63.8
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.2e-59 233.8 189 62.4
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 4.6e-59 231.9 189 61.9
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 1.0e-58 230.7 189 62.4
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 1.3e-58 230.3 187 65.8
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 2.3e-58 229.6 189 69.3
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 3.0e-58 229.2 189 61.4
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 6.7e-58 228.0 196 69.4
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.1e-57 227.3 189 61.4
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 1.9e-57 226.5 189 59.3
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 3.3e-57 225.7 189 59.8
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 4.3e-57 225.3 189 67.7
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 4.3e-57 225.3 190 60.0
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 5.7e-57 224.9 190 58.9
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.6e-56 223.4 189 59.3
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 2.2e-56 223.0 192 58.3
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 2.8e-56 222.6 198 63.1
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 4.8e-56 221.9 189 68.3
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 6.3e-56 221.5 190 59.5
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 6.3e-56 221.5 190 59.5
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 6.3e-56 221.5 189 63.0
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 8.2e-56 221.1 192 57.8
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 2.4e-55 219.5 188 66.0
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 2.4e-55 219.5 190 68.9
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 2.4e-55 219.5 190 59.5
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.1e-55 219.2 188 67.0
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 4.1e-55 218.8 188 59.0
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 4.1e-55 218.8 190 64.7
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 5.3e-55 218.4 189 58.7
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 9.0e-55 217.6 189 57.7
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.2e-54 217.2 189 63.0
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 1.5e-54 216.9 190 64.7
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.5e-54 216.9 190 64.7
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 1.5e-54 216.9 190 66.8
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.0e-54 216.5 190 57.9
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 4.5e-54 215.3 188 64.4
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 4.5e-54 215.3 189 59.8
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 1.0e-53 214.2 190 63.2
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.0e-53 214.2 188 57.4
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.0e-53 214.2 190 57.9
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 1.3e-53 213.8 188 64.4
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.3e-53 213.8 190 62.6
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.7e-53 213.4 188 63.8
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 1.7e-53 213.4 188 63.8
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 1.7e-53 213.4 188 63.8
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 1.7e-53 213.4 189 58.2
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 2.2e-53 213.0 188 64.9
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 3.8e-53 212.2 190 57.9
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 5.0e-53 211.8 189 66.7
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 8.5e-53 211.1 189 63.0
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.4e-52 210.3 189 65.6
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.4e-52 210.3 194 58.2
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 3.2e-52 209.1 196 62.2
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 4.2e-52 208.8 188 62.8
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 7.2e-52 208.0 189 60.8
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 9.4e-52 207.6 189 63.5
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 2.1e-51 206.5 189 62.4
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 3.6e-51 205.7 188 65.4
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.6e-51 205.7 189 64.0
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 4.6e-51 205.3 188 62.8
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 6.1e-51 204.9 188 62.8
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 7.9e-51 204.5 188 62.2
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 1.0e-50 204.1 190 54.7
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.4e-50 203.8 190 59.5
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 3.0e-50 202.6 192 61.5
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 3.9e-50 202.2 197 60.9
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.0e-49 199.9 188 62.2
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.0e-49 199.9 189 64.0
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 2.5e-49 199.5 190 62.1
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 3.3e-49 199.1 188 52.7
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 1.3e-48 197.2 188 63.8
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 1.3e-48 197.2 189 59.8
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 3.4e-46 189.1 197 57.4
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 2.2e-45 186.4 189 52.4
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 5.1e-42 175.3 198 56.6
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 6.7e-42 174.9 188 58.5
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.6e-41 172.9 188 58.0
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 3.3e-41 172.6 188 54.3
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.3e-41 172.6 188 55.9
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 9.7e-41 171.0 188 50.0
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 1.3e-40 170.6 187 54.5
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 2.8e-40 169.5 136 69.1
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 6.3e-40 168.3 302 42.1
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 2.4e-39 166.4 192 49.0
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 4.1e-39 165.6 192 49.5
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 4.1e-39 165.6 187 55.6
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 2.9e-37 159.5 192 46.9
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 2.9e-37 159.5 192 46.9
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 5.0e-37 158.7 155 56.8
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 6.5e-37 158.3 188 52.1
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.1e-36 157.5 192 46.4
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.9e-36 156.8 187 45.5
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 2.5e-36 156.4 184 47.8
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 2.7e-35 152.9 134 60.4
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 9.7e-33 144.4 195 41.5
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 6.3e-32 141.7 111 59.5
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.0e-29 134.4 111 56.8
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 1.0e-29 134.4 111 56.8
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 3.8e-29 132.5 196 38.3
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 7.2e-28 128.3 221 42.5
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 1.2e-27 127.5 139 53.2
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.1e-27 126.7 155 54.2
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 4.7e-27 125.6 117 53.0
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 7.5e-25 118.2 187 41.2
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 1.7e-24 117.1 126 50.0
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 4.1e-23 112.5 190 35.8
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 1.1e-20 104.4 188 34.6
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 9.4e-20 101.3 189 31.7
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 6.1e-19 98.6 115 48.7
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 5.9e-14 82.0 113 43.4
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 5.9e-14 82.0 113 43.4
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 1.7e-13 80.5 113 44.2
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 1.7e-13 80.5 113 44.2
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 2.3e-13 80.1 113 42.5
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 8.6e-13 78.2 113 41.6
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 3.3e-12 76.3 115 40.0
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 5.2e-10 68.9 38 78.9
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 5.7e-09 65.5 57 57.9
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.9e-08 62.4 38 73.7
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.9e-08 62.4 38 73.7
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.9e-08 62.4 38 73.7
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.9e-08 62.4 38 73.7
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.9e-08 62.4 38 73.7
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 1.1e-07 61.2 46 60.9
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.4e-07 60.8 38 71.1
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 5.4e-07 58.9 203 30.0
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 1.6e-06 57.4 35 71.4
SGA_v2.0_scaffold17G08150 Striga asiatica HOM05D008771 ORTHO05D010664 2.0e-06 57.0 30 86.7
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 3.5e-06 56.2 52 50.0
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 5.9e-06 55.5 85 38.8
THA.LOC104818140 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 7.8e-06 55.1 72 45.8


User provided reference genes

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