Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 7.3e-264 913.7 519 100.0
MSTRG.10462 Avicennia marina HOM05D007892 ORTHO05D009211 1.7e-111 407.5 248 100.0
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 9.2e-65 252.3 401 44.9
Migut.M00782 Erythranthe guttata HOM05D007892 ORTHO05D009211 2.3e-52 211.1 522 37.0
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 4.1e-41 173.7 439 36.9
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 1.2e-40 172.2 455 36.0
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 2.7e-40 171.0 455 35.8
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 6.6e-39 166.4 398 36.4
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 3.3e-38 164.1 429 35.7
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 2.7e-32 144.4 440 34.3
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 1.3e-31 142.1 476 31.5
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 1.3e-31 142.1 378 35.7
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 1.5e-30 138.7 411 33.6
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.9e-30 138.3 439 33.7
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 9.6e-30 136.0 439 33.3
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 9.6e-30 136.0 454 30.4
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.1e-28 132.5 404 32.9
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.1e-28 132.5 405 34.3
SGA_v2.0_scaffold73G24235 Striga asiatica HOM05D007892 ORTHO05D009211 1.4e-28 132.1 469 34.3
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 2.4e-28 131.3 416 34.4
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 6.9e-28 129.8 405 34.1
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 5.8e-27 126.7 428 34.6
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 2.2e-26 124.8 432 31.9
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 2.9e-26 124.4 406 32.5
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 4.9e-26 123.6 482 30.7
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 6.4e-26 123.2 443 33.2
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 4.2e-25 120.6 411 33.8
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 7.1e-25 119.8 435 32.2
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 1.3e-23 115.5 403 30.8
Oeu051084.1 Olea europaea HOM05D007892 ORTHO05D009211 8.7e-23 112.8 218 38.5
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 1.1e-22 112.5 467 31.0
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 4.3e-22 110.5 491 29.5
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 1.3e-21 109.0 471 29.9
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 1.6e-21 108.6 406 31.5
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 1.8e-20 105.1 417 31.7
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 1.2e-19 102.4 535 27.1
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 5.8e-19 100.1 465 28.2
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 7.6e-19 99.8 478 28.0
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 2.9e-18 97.8 460 28.7
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 4.9e-18 97.1 482 27.6
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 6.4e-18 96.7 436 30.5
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 8.4e-18 96.3 386 30.6
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 1.1e-17 95.9 424 30.2
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 1.4e-17 95.5 497 27.6
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 1.9e-17 95.1 478 28.5
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 2.4e-17 94.7 453 30.5
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 3.2e-17 94.4 359 30.6
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 7.1e-17 93.2 341 31.1
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 7.1e-17 93.2 562 31.0
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 7.1e-17 93.2 531 28.8
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 9.3e-17 92.8 558 26.5
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 1.6e-16 92.0 390 29.5
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 2.1e-16 91.7 394 30.5
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 6.0e-16 90.1 394 29.2
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 5.1e-15 87.0 457 28.7
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 5.1e-15 87.0 501 28.3
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 2.5e-14 84.7 442 27.1
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 3.3e-14 84.3 597 25.5
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 3.3e-14 84.3 532 27.3
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 4.3e-14 84.0 431 27.6
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 5.6e-14 83.6 396 30.1
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 7.4e-14 83.2 372 28.8
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 7.4e-14 83.2 562 26.3
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 1.3e-13 82.4 294 31.0
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 1.6e-13 82.0 465 28.0
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 6.2e-13 80.1 441 28.1
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 8.2e-13 79.7 411 28.2
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 1.4e-12 79.0 522 27.4
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 1.4e-12 79.0 283 30.0
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 1.8e-12 78.6 372 28.5
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 3.1e-12 77.8 293 31.4
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 3.1e-12 77.8 293 30.4
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 1.5e-11 75.5 47 78.7
Peaxi162Scf00069g01735 Petunia axillaris HOM05D021138 ORTHO05D009211 2.0e-11 75.1 392 28.6
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 7.6e-11 73.2 653 27.9
Nitab4.5_0002330g0130 Nicotiana tabacum HOM05D021138 ORTHO05D009211 1.3e-10 72.4 371 29.6
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 1.7e-10 72.0 47 74.5
Atru.chr2.2419 Acer truncatum HOM05D007892 ORTHO05D009211 3.8e-10 70.9 269 30.5
ATR0150G007 Amborella trichopoda HOM05D007892 ORTHO05D009211 3.8e-10 70.9 77 58.4
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 6.5e-10 70.1 443 27.8
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 1.1e-09 69.3 688 23.1
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 2.5e-09 68.2 656 25.0
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 4.2e-09 67.4 682 25.5
Os07g0107900 Oryza sativa ssp. japonica HOM05D061528 ORTHO05D009211 7.1e-09 66.6 336 27.7
PSO675G5502 Papaver somniferum HOM05D056025 ORTHO05D009211 1.2e-08 65.9 113 43.4
ECA236G4021 Erigeron canadensis HOM05D000553 ORTHO05D009211 3.5e-08 64.3 650 24.2
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 6.0e-08 63.5 180 35.0
PSO541G2379 Papaver somniferum HOM05D056025 ORTHO05D009211 7.9e-08 63.2 111 41.4
BcaB05g22092 Brassica carinata HOM05D012500 ORTHO05D009211 1.8e-07 62.0 398 23.9
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 2.3e-07 61.6 404 27.7
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 3.3e-06 57.8 399 27.6
Nitab4.5_0005017g0030 Nicotiana tabacum HOM05D021138 ORTHO05D009211 3.3e-06 57.8 404 27.2
AT5G53930 Arabidopsis thaliana HOM05D012500 ORTHO05D009211 5.7e-06 57.0 433 25.4
MELO3C025606.2 Cucumis melo HOM05D007892 ORTHO05D009211 7.4e-06 56.6 447 24.6


User provided reference genes

Program Settings