Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 0.0e+00 1563.9 827 100.0
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 2.4e-212 743.0 729 62.4
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 1.3e-189 667.5 749 58.1
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 2.7e-179 633.3 815 56.8
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 7.8e-179 631.7 736 57.2
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 3.5e-171 606.3 819 53.2
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.9e-157 560.1 798 51.0
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 6.5e-157 558.9 782 51.8
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 9.6e-153 545.0 795 50.3
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 2.0e-150 537.3 741 50.1
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.1e-148 531.6 783 49.6
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 8.7e-146 521.9 782 49.4
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 1.3e-141 508.1 741 49.5
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 1.9e-140 504.2 783 48.1
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 1.6e-139 501.1 864 45.3
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 3.1e-135 486.9 788 47.2
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 6.9e-135 485.7 811 45.7
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 2.2e-133 480.7 800 45.4
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 1.6e-131 474.6 773 44.8
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.4e-129 466.5 781 46.9
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 1.8e-127 461.1 820 44.5
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 3.1e-127 460.3 823 43.6
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 7.7e-126 455.7 796 44.7
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.0e-125 455.3 803 44.8
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 2.9e-125 453.8 765 45.6
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.1e-124 451.8 812 44.5
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.1e-123 447.6 788 46.7
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 3.6e-123 446.8 797 44.5
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 4.7e-123 446.4 765 45.2
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 6.1e-123 446.0 809 44.0
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.4e-122 444.9 790 44.6
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.8e-122 444.5 788 45.4
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 2.0e-121 441.0 740 46.5
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.7e-120 438.0 794 43.8
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 2.4e-119 434.1 772 45.6
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 2.0e-118 431.0 818 44.3
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.7e-118 430.6 783 43.8
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 4.5e-118 429.9 804 44.0
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 3.8e-117 426.8 786 43.4
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.5e-116 424.9 756 44.2
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 1.9e-116 424.5 828 41.4
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 1.9e-116 424.5 814 42.9
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 2.5e-116 424.1 811 42.8
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.5e-116 424.1 794 43.2
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 1.2e-115 421.8 789 44.1
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.6e-115 421.4 788 45.2
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.6e-115 421.4 811 41.8
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.1e-115 421.0 793 42.6
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 2.3e-114 417.5 735 45.6
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 6.8e-114 416.0 773 45.1
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.0e-113 414.5 803 41.6
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 2.0e-113 414.5 782 44.9
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 9.8e-113 412.1 769 45.6
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 1.1e-111 408.7 718 43.0
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.5e-110 403.7 794 42.3
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.3e-109 401.0 796 42.1
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.5e-108 398.3 814 42.0
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.5e-108 398.3 753 44.6
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 3.2e-108 397.1 782 42.2
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 3.2e-108 397.1 810 42.0
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.2e-107 395.2 830 42.0
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 6.1e-107 392.9 776 42.8
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.8e-106 391.3 741 41.6
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 4.0e-106 390.2 812 41.0
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.2e-106 389.8 689 43.8
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 2.2e-104 384.4 773 42.7
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 2.4e-103 380.9 824 41.1
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 4.1e-103 380.2 793 40.0
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 3.8e-101 373.6 816 40.7
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 8.6e-101 372.5 637 45.1
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 7.3e-100 369.4 788 40.6
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.2e-99 368.6 756 42.9
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.8e-99 367.5 732 41.8
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 1.4e-98 365.2 780 42.1
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.0e-97 361.3 726 41.3
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 9.8e-97 359.0 770 41.7
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.0e-93 349.0 764 38.4
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.0e-93 349.0 791 39.2
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.6e-93 346.3 668 41.3
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 1.1e-92 345.5 808 40.6
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 7.3e-92 342.8 764 40.2
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-91 342.0 712 40.4
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 1.6e-91 341.7 759 40.8
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 2.8e-91 340.9 768 39.2
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.8e-91 340.9 783 40.1
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 1.4e-90 338.6 734 40.1
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 4.0e-90 337.0 788 37.4
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 6.8e-90 336.3 803 37.6
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 2.4e-87 327.8 805 39.4
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 4.1e-87 327.0 738 38.6
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.2e-86 325.5 736 39.4
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 3.5e-86 323.9 788 39.6
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.7e-85 321.6 753 38.4
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 5.0e-85 320.1 789 38.0
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.5e-84 318.5 815 38.3
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 1.9e-84 318.2 821 38.0
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 9.5e-84 315.8 722 40.0
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.6e-83 315.1 819 36.1
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 8.1e-83 312.8 804 36.7
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.1e-82 312.4 719 39.5
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.1e-82 312.4 743 39.0
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.1e-82 312.4 751 39.7
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.3e-82 311.2 788 38.3
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 2.6e-81 307.8 826 35.8
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 8.3e-80 302.8 738 38.9
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 4.1e-79 300.4 814 35.7
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 7.8e-78 296.2 807 36.7
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.5e-76 292.0 715 38.0
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 2.4e-71 274.6 769 37.3
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 7.1e-71 273.1 748 36.6
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 6.0e-70 270.0 805 35.5
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 7.8e-70 269.6 740 36.5
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 6.6e-69 266.5 725 35.3
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.5e-68 264.6 801 33.1
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.8e-66 258.5 782 34.3
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.2e-65 255.8 774 34.2
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 2.0e-65 255.0 703 35.7
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 3.8e-64 250.8 715 34.0
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 3.8e-64 250.8 743 34.3
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.0e-61 242.7 773 33.9
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.0e-57 228.4 742 31.5
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 2.6e-57 228.0 745 34.6
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 6.7e-53 213.4 649 34.5
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.7e-53 213.4 742 30.9
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.1e-52 212.6 742 30.9
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 3.3e-52 211.1 732 32.0
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 5.6e-52 210.3 787 31.6
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 7.4e-52 209.9 637 33.9
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.3e-51 209.1 838 31.1
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 1.8e-50 205.3 792 30.6
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 2.4e-50 204.9 806 30.5
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 6.9e-50 203.4 781 30.6
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 1.3e-48 199.1 800 30.1
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 2.2e-48 198.4 682 32.0
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 6.4e-48 196.8 682 32.0
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.9e-47 195.3 690 30.6
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 2.1e-46 191.8 863 30.9
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 4.6e-46 190.7 682 31.8
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.0e-45 189.5 805 31.2
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 3.9e-45 187.6 885 30.4
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.9e-44 185.3 254 53.1
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.3e-43 182.6 560 32.9
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 1.6e-43 182.2 726 31.5
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 5.8e-41 173.7 771 30.2
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 8.4e-40 169.9 361 41.0
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.2e-39 167.9 509 35.8
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.2e-38 166.0 362 39.8
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 2.7e-38 164.9 874 30.1
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 1.3e-35 156.0 214 49.5
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.5e-33 149.1 307 40.1
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 2.6e-33 148.3 478 34.3
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.7e-32 145.6 184 49.5
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 1.0e-29 136.3 160 54.4
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.3e-29 135.2 426 32.9
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 3.0e-29 134.8 136 58.8
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 5.7e-28 130.6 303 37.0
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 1.8e-26 125.6 249 39.4
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 5.3e-26 124.0 276 38.8
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 5.3e-26 124.0 520 31.5
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 5.9e-25 120.6 724 26.9
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.6e-20 105.1 115 60.0
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 4.4e-20 104.4 102 62.7
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.4e-18 99.4 120 50.0
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.4e-15 89.4 173 38.7
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.7e-14 85.1 385 28.3
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 1.4e-10 72.8 70 58.6
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.7e-08 65.9 263 24.7
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 6.5e-08 63.9 706 24.5
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.5e-07 62.8 53 69.8
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 4.2e-07 61.2 351 28.8
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.6e-06 59.3 377 24.9


User provided reference genes

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