Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 2.1e-160 568.9 281 100.0
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 5.0e-77 292.0 257 58.4
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 2.1e-67 260.0 265 48.3
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 1.2e-59 234.2 258 45.7
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 5.7e-57 225.3 259 49.4
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 6.0e-54 215.3 262 43.5
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 3.9e-53 212.6 255 43.5
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 9.5e-52 208.0 258 45.7
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 2.1e-51 206.8 260 43.1
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 8.9e-50 201.4 272 44.1
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 2.6e-49 199.9 261 42.5
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 1.3e-48 197.6 260 38.1
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 3.7e-48 196.1 256 42.2
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 3.2e-47 193.0 280 39.3
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 5.4e-47 192.2 268 40.7
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 7.0e-47 191.8 204 43.1
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 1.2e-46 191.0 272 42.6
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 3.3e-44 183.0 250 44.0
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 5.6e-44 182.2 284 34.9
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 4.7e-43 179.1 258 42.2
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 4.7e-43 179.1 257 42.0
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 4.7e-43 179.1 202 40.1
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 6.2e-43 178.7 228 40.4
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 3.1e-42 176.4 207 44.4
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 4.0e-42 176.0 279 38.0
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 6.8e-42 175.3 253 41.5
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 2.0e-41 173.7 256 39.1
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 1.7e-40 170.6 252 35.3
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 1.4e-39 167.5 215 40.9
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 2.4e-39 166.8 219 40.6
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 2.1e-38 163.7 257 35.4
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 3.5e-38 162.9 258 36.8
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 4.6e-38 162.5 225 41.3
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 7.8e-38 161.8 257 36.6
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 1.0e-37 161.4 262 36.3
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 1.3e-37 161.0 287 35.2
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 5.1e-37 159.1 257 37.0
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.1e-37 159.1 258 37.6
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 5.1e-37 159.1 262 35.5
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 8.6e-37 158.3 256 38.7
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 1.1e-36 157.9 220 40.0
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.1e-36 157.9 220 40.0
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 1.1e-36 157.9 282 34.8
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 1.1e-36 157.9 257 33.5
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.9e-36 157.1 220 39.5
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 2.5e-36 156.8 301 33.6
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 5.6e-36 155.6 271 35.4
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 7.3e-36 155.2 265 36.6
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 1.2e-35 154.5 303 33.0
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 2.1e-35 153.7 261 34.1
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 3.6e-35 152.9 166 43.4
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 1.1e-34 151.4 217 38.7
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 1.4e-34 151.0 269 34.6
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 1.8e-34 150.6 215 39.1
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 5.2e-34 149.1 269 34.9
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 6.8e-34 148.7 246 34.1
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 1.2e-33 147.9 209 40.7
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 2.0e-33 147.1 252 33.3
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 2.0e-33 147.1 209 38.3
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 3.4e-33 146.4 201 41.8
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 4.4e-33 146.0 269 33.8
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 4.4e-33 146.0 266 34.2
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 1.3e-32 144.4 226 34.5
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 1.3e-32 144.4 216 33.8
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 2.9e-32 143.3 215 36.3
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 2.9e-32 143.3 215 36.3
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 2.9e-32 143.3 269 32.3
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 6.4e-32 142.1 266 32.3
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 1.4e-31 141.0 226 34.1
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 1.9e-31 140.6 228 35.1
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 1.6e-30 137.5 219 40.2
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 6.0e-30 135.6 227 33.0
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 1.0e-29 134.8 169 38.5
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 1.0e-29 134.8 272 31.6
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 1.3e-29 134.4 205 37.1
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 1.9e-28 130.6 182 39.6
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 4.3e-28 129.4 200 35.5
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 1.6e-27 127.5 190 40.0
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 9.0e-26 121.7 148 43.2
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 2.0e-25 120.6 156 37.2
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 5.8e-25 119.0 309 31.7
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 7.6e-25 118.6 237 31.6
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.3e-24 117.9 260 28.8
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 1.7e-24 117.5 200 34.0
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 2.2e-24 117.1 199 35.7
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 3.8e-24 116.3 250 32.4
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 3.5e-22 109.8 161 37.9
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 6.6e-21 105.5 219 31.1
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 5.6e-20 102.4 133 41.4
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 5.1e-13 79.3 96 40.6
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 1.4e-07 61.2 91 39.6
Actinidia17487 Actinidia chinensis HOM05D001524 ORTHO05D001392 6.0e-06 55.8 198 25.8


User provided reference genes

Program Settings