Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.0e-278 961.8 493 100.0
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 3.7e-208 728.4 438 87.0
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.1e-204 716.8 440 83.9
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.2e-198 696.8 438 82.2
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.4e-198 695.3 438 82.0
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 2.6e-190 669.1 437 80.8
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.1e-183 645.2 443 76.3
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.2e-173 612.8 424 75.2
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.0e-169 599.7 474 68.4
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 2.6e-169 599.4 443 72.2
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 3.7e-168 595.5 424 73.1
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.1e-167 594.0 427 72.6
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.1e-167 594.0 431 73.1
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 2.4e-167 592.8 419 72.1
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.5e-166 588.6 419 71.8
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 4.5e-166 588.6 427 72.1
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.0e-165 587.4 431 73.5
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.8e-165 585.5 422 72.0
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 5.0e-165 585.1 424 71.5
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 6.6e-165 584.7 425 71.1
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.5e-164 583.6 425 70.6
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.9e-164 583.2 430 71.9
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 2.5e-164 582.8 419 71.4
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.5e-164 581.6 419 71.4
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 9.5e-164 580.9 423 71.9
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 9.5e-164 580.9 425 71.5
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.8e-163 579.3 406 74.4
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 6.1e-163 578.2 429 70.2
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 6.1e-163 578.2 428 72.2
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 8.0e-163 577.8 445 69.0
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.8e-162 576.6 431 70.1
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 4.0e-162 575.5 429 70.2
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 8.9e-162 574.3 466 65.9
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 7.5e-161 571.2 426 70.0
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 2.2e-160 569.7 442 67.2
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 8.3e-160 567.8 422 69.4
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.4e-159 567.0 432 71.3
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.8e-159 566.6 424 68.4
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 4.5e-158 562.0 426 70.4
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.3e-157 560.5 426 70.7
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.3e-157 559.7 441 66.9
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 5.0e-157 558.5 435 67.6
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.1e-156 557.4 479 63.9
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 5.6e-156 555.1 432 67.4
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 4.7e-155 552.0 419 68.5
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.0e-154 550.8 430 67.0
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 1.0e-154 550.8 422 68.0
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.4e-154 550.4 429 66.2
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 1.4e-154 550.4 422 68.2
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 5.2e-154 548.5 425 66.4
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 5.2e-154 548.5 438 66.2
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 1.5e-153 547.0 454 65.2
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.5e-153 547.0 382 74.1
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.7e-152 543.5 424 67.9
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 9.2e-151 537.7 427 69.6
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 2.7e-150 536.2 426 65.7
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.3e-149 533.9 334 80.2
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 2.3e-149 533.1 424 65.1
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 3.9e-149 532.3 417 65.7
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 3.9e-149 532.3 430 67.4
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 3.3e-148 529.3 430 66.5
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 7.3e-148 528.1 375 72.3
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 9.5e-148 527.7 430 65.1
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 1.2e-147 527.3 417 65.7
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 6.2e-147 525.0 395 69.1
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 6.8e-146 521.5 424 65.6
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.5e-145 520.4 421 65.8
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.6e-145 519.6 393 69.7
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 9.8e-145 517.7 424 61.8
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 9.8e-145 517.7 423 66.7
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.2e-144 516.5 418 67.0
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 6.4e-144 515.0 429 63.6
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 1.9e-143 513.5 425 64.0
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 1.9e-143 513.5 385 71.4
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 7.0e-143 511.5 445 63.6
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.2e-142 510.8 426 64.6
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.6e-142 510.4 434 62.9
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 7.8e-142 508.1 428 61.9
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 1.3e-141 507.3 375 69.6
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.7e-141 506.9 439 62.4
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 2.3e-141 506.5 414 61.8
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 2.3e-141 506.5 431 62.4
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 2.3e-141 506.5 456 61.0
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 5.1e-141 505.4 428 63.1
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 5.1e-141 505.4 424 64.4
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 6.6e-141 505.0 456 58.3
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 1.1e-140 504.2 425 62.4
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 7.3e-140 501.5 467 60.0
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 3.6e-139 499.2 429 61.8
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 8.1e-139 498.0 429 61.8
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.8e-138 496.9 456 59.9
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 3.1e-138 496.1 441 60.8
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 3.1e-138 496.1 418 62.0
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 3.1e-138 496.1 403 66.5
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 2.6e-137 493.0 441 60.5
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 4.4e-137 492.3 428 61.2
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 5.8e-137 491.9 428 61.9
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 5.8e-137 491.9 437 61.3
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 5.8e-137 491.9 457 60.2
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 2.9e-136 489.6 423 63.1
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 6.4e-136 488.4 463 59.2
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.1e-135 487.6 462 58.9
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 1.4e-135 487.3 328 74.1
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 1.9e-135 486.9 387 66.4
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 2.4e-135 486.5 493 56.8
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 5.4e-135 485.3 401 61.3
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 5.4e-135 485.3 423 61.7
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.2e-134 484.2 428 60.7
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 6.0e-134 481.9 439 60.8
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 8.6e-133 478.0 446 59.6
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 8.9e-130 468.0 411 60.3
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 2.4e-127 459.9 411 59.1
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 2.1e-123 446.8 420 59.5
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-122 444.5 422 56.4
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.8e-122 443.7 405 60.0
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 5.3e-122 442.2 406 61.6
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.2e-121 441.0 469 54.4
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 5.4e-119 432.2 326 67.5
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.2e-118 431.0 436 52.8
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.6e-118 430.6 444 53.4
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 2.7e-118 429.9 430 54.9
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 2.3e-117 426.8 426 55.9
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 1.5e-116 424.1 426 55.6
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 3.6e-115 419.5 362 63.0
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 2.0e-113 413.7 323 64.1
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.3e-112 411.0 422 55.5
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 5.4e-111 405.6 375 57.1
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 2.1e-110 403.7 403 53.8
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 6.0e-110 402.1 287 70.4
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 6.9e-106 388.7 296 64.9
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.2e-104 383.6 236 78.0
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 4.9e-104 382.5 250 76.4
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 2.5e-103 380.2 352 58.2
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.5e-100 370.9 417 50.6
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 2.1e-94 350.5 266 69.2
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 1.0e-93 348.2 378 50.8
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 4.3e-92 342.8 339 54.3
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.6e-91 340.9 381 50.1
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 3.1e-90 336.7 393 48.9
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 3.4e-89 333.2 380 50.8
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 7.7e-89 332.0 344 50.0
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 8.5e-88 328.6 273 63.7
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-87 328.2 371 50.1
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 1.4e-87 327.8 371 50.1
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.6e-86 324.3 374 48.7
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-82 311.6 360 49.4
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 2.4e-82 310.5 405 46.9
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.7e-80 304.3 354 50.8
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 9.7e-76 288.5 342 49.1
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 4.5e-73 279.6 184 75.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 3.1e-58 230.3 354 39.0
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 2.6e-52 210.7 426 36.4
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 9.8e-52 208.8 426 36.2
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 4.5e-49 199.9 153 66.0
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.0e-48 196.4 125 72.8
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 2.8e-46 190.7 200 52.0
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 7.8e-41 172.6 149 63.8
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 6.4e-35 152.9 166 51.2
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.7e-33 147.5 94 74.5
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 6.2e-30 136.3 158 57.0
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.3e-29 134.4 84 79.8
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.7e-27 127.1 133 53.4
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 3.7e-27 127.1 119 57.1
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.4e-26 125.2 114 52.6
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 1.2e-25 122.1 210 40.0
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 1.0e-24 119.0 99 55.6
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 2.3e-24 117.9 70 85.7
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-22 112.1 94 56.4
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 2.8e-22 110.9 95 68.4
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 3.6e-22 110.5 94 57.4
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 6.2e-22 109.8 101 53.5
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.1e-17 94.7 311 30.5
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.8e-14 84.3 137 43.1
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 2.4e-13 81.3 120 40.0
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 5.8e-12 76.6 49 73.5
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 1.7e-11 75.1 96 43.8
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 6.4e-11 73.2 120 37.5
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 1.9e-10 71.6 53 56.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 1.9e-10 71.6 53 56.6
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 3.5e-09 67.4 189 32.3
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 2.3e-08 64.7 44 75.0
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 3.9e-08 63.9 39 76.9
SHI14583 Sapria himalayana HOM05D003649 ORTHO05D004498 4.3e-07 60.5 107 40.2
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 7.3e-07 59.7 91 46.2
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 1.3e-06 58.9 83 42.2
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 4.8e-06 57.0 91 45.1


User provided reference genes

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