Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 1.2e-283 979.2 477 100.0
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 3.4e-243 844.7 474 85.2
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.9e-230 802.4 452 85.0
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 4.0e-228 794.7 465 80.2
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.0e-228 793.5 471 79.8
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 2.0e-227 792.3 541 72.6
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 2.2e-226 788.9 474 78.9
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 1.6e-221 772.7 477 78.0
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.4e-220 769.6 473 77.6
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.4e-220 768.8 472 78.2
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 4.0e-220 768.1 467 75.6
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 5.3e-220 767.7 477 75.3
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 9.0e-220 766.9 470 76.8
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.0e-218 763.5 475 75.6
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.5e-218 760.8 467 76.4
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 8.4e-218 760.4 477 78.6
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-217 760.0 467 76.7
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.1e-217 760.0 476 76.5
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.5e-217 757.7 467 76.0
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 7.1e-217 757.3 474 75.7
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 9.3e-217 756.9 470 76.6
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.2e-216 756.5 474 76.4
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.6e-216 756.1 466 76.6
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 2.1e-216 755.7 478 74.7
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 3.0e-215 751.9 471 74.7
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 3.0e-215 751.9 471 75.6
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 5.1e-215 751.1 473 74.8
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.7e-215 750.4 474 74.9
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 1.5e-214 749.6 474 75.3
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.5e-214 748.8 465 75.9
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.3e-214 748.4 474 74.9
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 7.4e-214 747.3 472 76.3
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 9.6e-214 746.9 467 76.7
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 9.6e-214 746.9 472 76.5
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.3e-213 746.5 471 74.1
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.3e-213 746.5 472 76.3
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 6.3e-213 744.2 471 73.7
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 6.3e-213 744.2 472 74.6
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 8.2e-213 743.8 474 74.7
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.8e-212 742.7 471 73.9
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 9.0e-212 740.3 478 73.8
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.5e-211 739.6 474 74.3
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 4.5e-211 738.0 466 73.8
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 5.9e-211 737.6 472 73.5
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.3e-210 736.5 474 74.3
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.3e-210 736.5 471 73.0
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.3e-210 736.5 529 71.8
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.7e-210 736.1 479 74.5
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.1e-209 733.4 471 73.0
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.4e-209 733.0 467 74.7
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 2.5e-209 732.3 457 76.4
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 4.2e-209 731.5 471 72.8
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 5.5e-209 731.1 459 75.2
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.1e-208 729.2 467 73.4
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 7.9e-208 727.2 477 72.5
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 1.0e-207 726.9 464 76.3
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.3e-207 725.7 471 73.0
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 6.7e-207 724.2 470 73.6
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 7.4e-206 720.7 471 72.2
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.6e-205 719.5 474 71.1
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.2e-205 719.2 459 74.3
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.8e-205 718.8 474 71.5
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.1e-204 716.8 445 75.7
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.4e-204 715.7 469 74.6
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 5.3e-204 714.5 431 78.9
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.4e-201 706.4 467 71.7
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.4e-201 706.4 471 72.0
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 7.2e-201 704.1 471 72.0
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.1e-200 702.6 426 77.2
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.7e-200 702.2 478 71.3
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 7.7e-195 684.1 476 70.4
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.1e-193 680.2 472 70.8
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.4e-193 679.9 465 70.1
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.4e-193 679.9 477 70.0
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.4e-193 677.2 467 70.7
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 3.6e-192 675.2 471 69.6
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.6e-192 675.2 409 80.4
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.4e-191 673.3 482 70.1
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 5.7e-190 667.9 468 67.5
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.8e-188 662.9 467 70.4
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 9.1e-188 660.6 474 69.2
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.6e-187 659.8 473 69.3
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 3.5e-187 658.7 467 69.8
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.0e-186 657.1 467 69.6
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.2e-186 656.0 473 69.3
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 2.2e-186 656.0 427 72.1
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.9e-185 652.9 467 69.8
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 2.5e-185 652.5 473 68.7
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 3.2e-185 652.1 473 68.3
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 5.5e-185 651.4 477 67.9
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 1.2e-184 650.2 478 68.2
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 4.7e-184 648.3 467 69.4
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.0e-183 647.1 502 63.7
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.1e-182 643.7 473 67.4
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.3e-182 642.1 516 60.5
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 4.4e-182 641.7 467 69.0
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 9.7e-182 640.6 475 67.8
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 9.7e-182 640.6 475 67.8
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 9.7e-182 640.6 470 67.0
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.3e-181 640.2 472 68.4
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 4.8e-181 638.3 470 67.0
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.1e-180 635.6 414 72.2
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 9.4e-177 624.0 474 63.3
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.6e-176 623.2 474 65.6
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 4.7e-176 621.7 414 70.0
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 5.2e-175 618.2 469 67.0
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 8.3e-173 610.9 447 67.8
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 5.2e-167 591.7 366 74.6
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.1e-164 582.4 472 64.0
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.0e-159 567.4 483 59.2
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.8e-159 566.6 350 75.7
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 1.5e-158 563.5 513 56.7
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 1.9e-153 546.6 488 58.0
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.8e-152 542.7 363 71.1
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.0e-151 538.9 472 59.5
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.8e-150 534.3 467 61.2
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 6.6e-146 521.5 474 56.5
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 7.3e-137 491.5 474 51.1
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.6e-131 473.8 546 47.3
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.6e-120 437.2 270 74.4
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.2e-120 435.3 474 50.6
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 7.4e-113 411.8 321 62.6
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.8e-109 399.4 329 64.1
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.7e-104 382.9 235 78.7
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 6.0e-99 365.5 479 45.3
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 9.7e-89 331.6 382 45.0
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.3e-88 331.3 285 63.5
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 8.5e-85 318.5 274 58.8
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.7e-80 304.3 489 36.4
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.3e-79 299.3 202 68.8
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.7e-74 282.3 248 60.9
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.6e-73 280.4 272 51.1
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 3.7e-72 276.6 458 40.6
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.7e-69 267.7 505 35.8
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 4.7e-67 259.6 463 38.7
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.8e-53 213.4 181 60.8
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.8e-53 213.4 209 53.1
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-52 211.5 286 43.7
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.0e-50 205.3 198 53.5
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.8e-50 204.5 174 58.6
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.0e-50 203.8 110 83.6
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.4e-49 200.3 110 81.8
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-48 198.4 110 80.9
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 4.7e-43 179.9 202 50.5
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 3.4e-41 173.7 124 67.7
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.2e-40 171.0 110 72.7
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.3e-37 161.8 107 72.9
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 1.5e-36 158.3 107 71.0
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-33 148.3 337 31.5
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 9.8e-33 145.6 92 71.7
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.7e-32 144.8 122 57.4
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 2.7e-30 137.5 116 57.8
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-28 131.7 67 94.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 6.0e-22 109.8 125 52.0
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 1.2e-19 102.1 65 72.3
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.4e-18 98.6 58 77.6
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 1.4e-10 72.0 80 51.2
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 1.2e-09 68.9 45 75.6
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 3.4e-09 67.4 41 75.6
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 5.4e-07 60.1 46 56.5
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 2.7e-06 57.8 39 69.2
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 6.0e-06 56.6 39 66.7


User provided reference genes

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