Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.3e-210 736.1 367 100.0
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.7e-139 499.2 315 78.4
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 5.6e-129 464.9 329 72.0
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.9e-125 451.8 317 71.9
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 3.5e-123 445.7 319 72.1
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.3e-120 437.2 317 71.3
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.6e-120 436.8 281 76.2
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 4.8e-120 435.3 317 68.5
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 2.4e-119 433.0 318 69.8
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 2.4e-119 433.0 278 75.5
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 3.1e-119 432.6 317 68.5
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.5e-118 430.3 318 68.2
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 5.8e-118 428.3 308 70.1
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.0e-117 427.6 317 67.2
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 2.2e-117 426.4 318 68.6
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 5.5e-116 421.8 281 72.2
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 3.5e-115 419.1 317 65.3
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 3.5e-115 419.1 317 65.3
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 4.6e-115 418.7 318 67.0
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.8e-114 416.8 318 66.7
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 3.0e-114 416.0 317 66.9
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 5.1e-114 415.2 318 65.7
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 5.1e-114 415.2 318 66.4
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 6.7e-114 414.8 318 64.2
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 6.7e-114 414.8 318 66.0
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 3.3e-113 412.5 316 63.9
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 4.3e-113 412.1 332 64.5
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 7.4e-113 411.4 317 64.0
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 9.6e-113 411.0 318 65.1
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.1e-111 407.5 347 59.4
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.1e-111 407.5 318 65.1
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.8e-111 406.8 336 61.3
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 1.8e-111 406.8 315 62.9
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 4.5e-110 402.1 321 64.2
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 7.6e-110 401.4 317 63.7
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.3e-109 400.6 313 64.2
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 2.9e-109 399.4 317 62.8
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 3.8e-109 399.1 316 63.9
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 3.8e-109 399.1 313 63.3
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.0e-109 398.7 321 62.0
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 5.0e-109 398.7 316 63.0
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.4e-108 397.1 321 62.3
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.9e-108 396.7 318 62.9
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 2.5e-108 396.4 313 62.9
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.6e-107 393.7 314 63.1
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 2.1e-107 393.3 312 63.1
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 3.6e-107 392.5 312 63.1
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 4.6e-107 392.1 282 68.8
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 6.1e-107 391.7 311 64.0
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 7.9e-107 391.3 332 60.8
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.8e-106 390.2 335 59.1
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.8e-106 390.2 315 61.6
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 3.9e-106 389.0 336 57.7
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 3.9e-106 389.0 315 61.9
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 8.7e-106 387.9 315 62.2
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 8.7e-106 387.9 315 62.2
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.5e-105 387.1 270 70.4
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 1.5e-105 387.1 316 61.7
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 4.3e-105 385.6 360 56.4
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 5.7e-105 385.2 317 62.1
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.3e-104 384.0 315 60.6
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 1.6e-104 383.6 303 64.4
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 2.2e-104 383.3 315 60.0
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 4.8e-104 382.1 336 57.1
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 4.8e-104 382.1 317 59.6
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 8.2e-104 381.3 318 61.3
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.1e-103 380.9 314 59.9
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.8e-103 380.2 312 62.5
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 2.4e-103 379.8 316 60.8
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 6.9e-103 378.3 315 61.3
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 5.9e-102 375.2 311 59.2
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 3.8e-101 372.5 279 65.9
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 5.0e-101 372.1 319 58.9
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.2e-100 369.4 320 58.8
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 5.5e-100 368.6 280 61.4
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 3.6e-99 365.9 317 59.6
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 6.7e-98 361.7 274 63.5
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 2.0e-97 360.1 281 61.9
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 2.0e-97 360.1 317 58.0
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.1e-95 354.4 317 58.7
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.1e-95 354.4 320 56.2
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 1.9e-92 343.6 330 52.4
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 3.2e-92 342.8 327 52.6
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 5.5e-92 342.0 316 55.7
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 6.1e-91 338.6 320 54.1
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 2.3e-90 336.7 282 57.4
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 2.3e-90 336.7 281 60.5
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 5.2e-90 335.5 315 57.1
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 5.2e-90 335.5 281 60.1
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.5e-89 334.0 319 51.7
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.5e-89 334.0 317 54.6
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 3.3e-89 332.8 312 54.5
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 1.8e-87 327.0 260 65.8
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.8e-87 327.0 312 54.2
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 2.4e-87 326.6 317 53.3
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 4.1e-87 325.9 312 53.8
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 4.1e-87 325.9 312 53.8
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 7.0e-87 325.1 312 53.5
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.2e-86 324.3 312 53.5
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.6e-86 323.9 286 58.0
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 3.5e-86 322.8 317 52.7
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 5.9e-86 322.0 312 53.5
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 5.9e-86 322.0 312 52.9
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 5.9e-86 322.0 312 52.9
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 7.7e-86 321.6 312 53.5
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 2.2e-85 320.1 312 53.2
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 2.2e-85 320.1 312 53.2
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 5.0e-85 318.9 312 53.2
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 5.0e-85 318.9 223 71.3
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.1e-83 313.5 246 65.9
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 2.7e-83 313.2 253 58.9
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 2.3e-82 310.1 283 54.8
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 1.2e-81 307.8 236 66.5
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 4.8e-80 302.4 220 66.8
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 4.5e-78 295.8 252 59.5
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 8.5e-77 291.6 252 61.1
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 8.0e-75 285.0 272 53.3
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.2e-73 281.2 318 49.7
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 2.6e-73 280.0 285 48.8
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 1.7e-72 277.3 276 51.1
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 3.6e-67 259.6 328 42.7
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 3.5e-62 243.0 198 61.1
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.6e-54 217.6 177 62.1
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.0e-49 200.7 191 52.9
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 2.7e-46 190.3 194 54.1
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 3.3e-44 183.3 280 41.4
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 1.6e-43 181.0 144 63.2
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 8.6e-37 158.7 109 67.0
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.1e-31 141.7 112 62.5
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 7.6e-25 119.0 119 52.9
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.5e-12 78.2 263 29.7
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 3.7e-11 73.6 138 34.8


User provided reference genes

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