Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 1.1e-176 623.2 324 100.0
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.7e-124 449.9 344 71.8
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 5.3e-123 444.9 338 72.8
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 1.5e-117 426.8 277 78.3
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 4.4e-117 425.2 325 72.3
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 7.4e-117 424.5 263 81.0
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 6.3e-116 421.4 305 73.1
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 5.3e-115 418.3 311 73.3
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 4.5e-114 415.2 255 82.4
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 5.9e-114 414.8 308 71.4
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 5.9e-114 414.8 308 73.4
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.0e-113 414.1 324 67.9
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 1.3e-113 413.7 308 71.1
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.7e-113 413.3 265 78.1
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 2.9e-113 412.5 328 71.0
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 6.5e-113 411.4 307 69.1
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 1.5e-112 410.2 336 66.7
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 1.5e-112 410.2 314 69.1
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.9e-112 409.8 335 67.5
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 2.5e-112 409.5 285 73.7
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 3.2e-112 409.1 313 72.2
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 5.5e-112 408.3 259 78.4
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 5.5e-112 408.3 298 72.1
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 7.2e-112 407.9 331 68.9
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 2.1e-111 406.4 320 68.4
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 2.7e-111 406.0 260 79.2
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 4.7e-111 405.2 302 71.2
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 4.7e-111 405.2 312 70.8
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 8.0e-111 404.4 281 73.0
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 8.0e-111 404.4 308 67.5
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.0e-110 404.1 321 67.0
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 1.4e-110 403.7 260 80.4
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 2.3e-110 402.9 303 70.6
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.0e-110 402.5 313 67.7
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 3.0e-110 402.5 313 70.9
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 3.0e-110 402.5 311 68.5
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 4.0e-110 402.1 301 70.1
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.0e-110 402.1 265 78.5
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.2e-110 401.7 253 79.4
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 6.8e-110 401.4 253 79.4
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 8.8e-110 401.0 260 77.7
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 8.8e-110 401.0 300 72.0
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 1.2e-109 400.6 256 78.5
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.5e-109 400.2 310 67.7
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 1.5e-109 400.2 303 70.3
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.5e-109 400.2 314 68.5
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 2.6e-109 399.4 256 80.5
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.4e-109 399.1 253 79.1
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 3.4e-109 399.1 311 67.5
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 5.7e-109 398.3 291 69.8
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 5.7e-109 398.3 313 69.3
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 7.5e-109 397.9 308 67.5
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 9.7e-109 397.5 314 69.1
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.3e-108 397.1 273 72.9
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.3e-108 397.1 253 78.3
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.7e-108 396.7 325 66.5
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 4.8e-108 395.2 319 67.1
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 4.8e-108 395.2 278 73.7
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 8.3e-108 394.4 274 73.4
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.8e-107 393.3 328 65.5
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 2.4e-107 392.9 291 69.4
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 3.1e-107 392.5 267 74.5
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 4.1e-107 392.1 346 63.3
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.2e-106 390.6 315 66.3
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 1.2e-106 390.6 262 74.8
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 2.0e-106 389.8 259 74.1
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 2.0e-106 389.8 253 78.3
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 4.5e-106 388.7 311 66.6
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 7.7e-106 387.9 258 76.4
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 7.7e-106 387.9 294 70.1
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 1.3e-105 387.1 258 75.6
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 2.2e-105 386.3 258 75.2
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 3.8e-105 385.6 258 75.6
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 3.8e-105 385.6 311 66.2
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 6.5e-105 384.8 321 65.1
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 1.5e-104 383.6 258 74.8
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.5e-104 383.6 319 66.8
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 2.5e-104 382.9 321 64.5
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 3.2e-104 382.5 321 64.5
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 5.5e-104 381.7 321 64.5
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 5.5e-104 381.7 258 74.8
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 7.2e-104 381.3 328 63.7
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 1.2e-103 380.6 258 76.0
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.2e-103 380.6 315 64.4
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 2.7e-103 379.4 258 74.0
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.7e-103 378.6 296 68.9
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 6.1e-103 378.3 253 75.5
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.3e-102 376.3 293 68.3
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 3.0e-102 375.9 331 62.8
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 1.5e-101 373.6 379 58.3
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 2.6e-101 372.9 256 72.3
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 5.7e-101 371.7 276 70.3
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 9.8e-101 370.9 321 61.4
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 3.5e-98 362.5 285 68.1
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 7.2e-96 354.8 253 71.5
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 8.9e-94 347.8 225 76.9
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 8.9e-94 347.8 225 76.9
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 8.9e-94 347.8 263 66.2
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 4.5e-90 335.5 233 70.4
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 7.3e-88 328.2 252 70.6
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 7.3e-88 328.2 477 44.4
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.5e-85 320.5 254 69.3
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 3.2e-83 312.8 252 61.9
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 3.5e-82 309.3 250 70.0
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 4.6e-82 308.9 194 79.4
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 6.6e-81 305.1 228 70.2
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 2.6e-77 293.1 178 83.1
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 3.4e-77 292.7 206 72.8
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 7.5e-77 291.6 246 61.0
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 2.2e-76 290.0 269 56.5
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 2.2e-76 290.0 240 62.9
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 7.8e-74 281.6 290 55.5
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 1.0e-73 281.2 282 49.6
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 8.1e-71 271.6 241 55.6
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 2.6e-69 266.5 288 52.8
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.0e-65 253.1 199 68.3
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 3.9e-57 226.1 279 45.5
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 1.9e-56 223.8 171 70.2
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 8.1e-55 218.4 196 58.7
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.1e-54 218.0 240 50.0
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 3.1e-54 216.5 162 68.5
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.0e-49 201.4 267 44.2
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 8.1e-47 191.8 149 67.1
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 5.3e-46 189.1 241 45.2
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.2e-26 124.8 98 68.4
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 2.0e-21 107.5 117 50.4
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 2.9e-20 103.6 85 62.4
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 9.4e-19 98.6 72 65.3
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.7e-15 87.8 62 69.4
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 2.4e-14 84.0 57 77.2
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 4.1e-14 83.2 52 84.6
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 2.3e-09 67.4 58 55.2
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 6.7e-09 65.9 71 47.9
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 8.8e-09 65.5 42 73.8
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 5.7e-08 62.8 40 65.0
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 1.7e-07 61.2 233 29.2
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 3.7e-07 60.1 232 28.9
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 3.1e-06 57.0 87 43.7


User provided reference genes

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