Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 2.5e-184 648.7 327 100.0
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.6e-159 566.2 327 85.0
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 4.7e-151 538.1 327 79.5
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.3e-148 530.0 328 79.6
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 4.5e-146 521.5 326 77.0
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 6.1e-143 511.1 327 74.9
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.0e-142 510.4 329 75.1
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.3e-142 509.2 329 74.8
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 3.0e-142 508.8 329 73.9
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.2e-141 506.9 322 75.8
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 2.6e-141 505.8 329 73.9
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.4e-141 505.0 330 73.9
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 3.7e-140 501.9 326 74.2
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 6.3e-140 501.1 327 74.0
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 8.3e-140 500.7 327 73.1
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.8e-139 499.6 322 74.5
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.3e-139 498.0 326 74.2
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 2.0e-138 496.1 327 73.1
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.5e-138 495.4 321 74.5
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 1.3e-137 493.4 326 72.7
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 3.8e-137 491.9 323 72.8
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 5.0e-137 491.5 326 73.0
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.5e-136 490.0 328 73.2
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 2.5e-136 489.2 328 73.2
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 3.2e-136 488.8 326 72.7
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 9.4e-136 487.3 329 73.6
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 1.2e-135 486.9 327 73.1
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 2.1e-135 486.1 323 72.4
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.7e-135 485.7 323 72.4
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 3.6e-135 485.3 323 72.8
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 6.1e-135 484.6 331 71.6
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 2.3e-134 482.6 327 71.6
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 2.3e-134 482.6 324 71.0
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 3.0e-134 482.3 329 72.3
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 4.0e-134 481.9 322 73.3
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 8.8e-134 480.7 323 71.5
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 4.4e-133 478.4 326 72.1
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 7.5e-133 477.6 328 71.0
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 7.5e-133 477.6 322 71.1
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 3.7e-132 475.3 321 71.3
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 4.8e-132 474.9 325 69.2
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.3e-132 474.6 323 69.7
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 1.1e-131 473.8 325 71.7
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 2.4e-131 472.6 323 71.2
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 2.4e-131 472.6 327 70.0
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 4.1e-131 471.9 329 71.7
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 5.4e-131 471.5 334 69.5
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 5.4e-131 471.5 330 70.6
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.4e-131 471.5 330 70.6
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 7.0e-131 471.1 323 70.6
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 7.0e-131 471.1 329 70.2
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.2e-130 470.3 323 69.0
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.6e-130 469.9 323 68.7
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 2.0e-130 469.5 319 73.0
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.9e-130 468.0 330 70.0
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 2.9e-129 465.7 323 70.3
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.9e-128 463.0 323 70.6
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 4.2e-128 461.8 323 68.4
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 4.2e-128 461.8 327 68.2
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 4.2e-128 461.8 321 69.2
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 5.5e-128 461.5 327 68.2
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 9.5e-128 460.7 327 68.8
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.2e-127 460.3 545 49.4
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.6e-127 459.9 325 68.0
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.6e-127 459.9 327 67.6
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 2.8e-127 459.1 323 68.7
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 2.8e-127 459.1 323 66.3
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 3.6e-127 458.8 321 69.8
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 4.7e-127 458.4 323 68.7
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 6.1e-127 458.0 319 69.3
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.0e-126 457.2 322 69.3
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.8e-126 456.4 323 68.4
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 2.3e-126 456.1 327 67.0
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 6.8e-126 454.5 320 67.8
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.5e-125 453.4 370 63.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 5.7e-125 451.4 330 68.2
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.3e-124 450.3 322 68.0
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 6.3e-124 448.0 319 67.1
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 2.9e-121 439.1 323 66.3
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 6.6e-121 438.0 323 65.6
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.5e-120 436.8 325 66.5
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.5e-120 434.1 323 64.7
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 3.6e-119 432.2 324 64.2
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 3.6e-119 432.2 324 64.2
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.4e-118 430.3 316 66.1
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 1.4e-118 430.3 308 67.2
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 2.3e-118 429.5 324 63.0
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 3.1e-118 429.1 324 63.6
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 2.6e-117 426.0 323 62.5
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 2.6e-117 426.0 323 62.5
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 7.5e-117 424.5 324 64.5
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.7e-116 423.3 324 61.7
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 2.2e-116 422.9 324 61.7
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.4e-115 420.2 324 61.7
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 3.2e-115 419.1 324 62.0
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 9.2e-115 417.5 417 55.4
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 3.5e-114 415.6 294 68.4
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.5e-114 415.6 279 73.1
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 7.8e-114 414.5 326 62.3
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 1.0e-113 414.1 324 61.4
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.3e-113 412.9 305 62.6
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.1e-112 410.6 322 64.3
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.1e-112 410.6 326 62.0
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 1.9e-112 409.8 324 61.1
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.9e-112 409.8 324 60.5
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 3.3e-112 409.1 323 61.6
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 8.0e-111 404.4 325 60.0
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 8.9e-110 401.0 266 74.1
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 3.7e-108 395.6 254 75.2
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 5.4e-107 391.7 290 64.5
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.6e-106 390.2 376 55.1
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 4.7e-103 378.6 323 56.7
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 4.0e-102 375.6 326 57.1
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.4e-101 372.1 326 59.5
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.5e-101 371.3 324 59.3
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.0e-98 361.7 323 57.6
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.5e-96 357.1 686 35.4
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.1e-94 350.9 288 61.1
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 5.8e-93 345.1 326 55.5
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 9.3e-91 337.8 269 63.6
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 6.6e-89 331.6 232 68.5
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 4.3e-88 328.9 265 60.8
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.8e-86 323.6 318 49.7
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 9.9e-85 317.8 222 68.5
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 8.4e-84 314.7 314 47.5
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.4e-83 313.9 314 48.1
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.8e-79 299.7 202 71.3
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.4e-78 297.4 255 59.6
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.9e-75 287.0 184 76.6
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.9e-72 276.9 308 46.8
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.3e-68 264.2 221 58.4
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 9.7e-56 221.5 299 39.8
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 4.5e-45 186.0 194 45.9
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 2.1e-34 150.6 99 71.7
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 8.0e-34 148.7 96 75.0
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 2.4e-30 137.1 99 68.7
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 9.1e-30 135.2 119 60.5
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.5e-29 133.3 75 77.3
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.3e-28 131.3 86 72.1
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.5e-28 129.0 95 65.3
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.1e-27 128.3 95 65.3
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 4.0e-25 119.8 331 27.8
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 4.5e-21 106.3 71 71.8
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 6.8e-17 92.4 83 54.2
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 2.3e-12 77.4 69 55.1
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 6.8e-09 65.9 43 76.7
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 8.9e-09 65.5 42 76.2
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 8.9e-09 65.5 54 61.1
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 8.9e-09 65.5 54 61.1
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.4e-08 63.5 56 51.8
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.3e-07 61.6 43 67.4
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 1.1e-06 58.5 63 47.6


User provided reference genes

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