Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 4.2e-71 271.2 128 100.0
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 4.0e-66 254.6 124 94.4
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 9.0e-66 253.4 127 91.3
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 9.0e-66 253.4 124 94.4
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.5e-65 252.7 123 95.1
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.5e-65 252.7 127 91.3
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.0e-65 252.3 124 94.4
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 4.5e-65 251.1 124 93.5
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 4.5e-65 251.1 124 93.5
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 4.5e-65 251.1 124 93.5
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 4.5e-65 251.1 124 93.5
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 5.8e-65 250.8 127 90.6
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 5.8e-65 250.8 124 94.4
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 7.6e-65 250.4 124 92.7
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 7.6e-65 250.4 124 92.7
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 7.6e-65 250.4 124 92.7
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 9.9e-65 250.0 124 93.5
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 9.9e-65 250.0 124 93.5
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 9.9e-65 250.0 124 93.5
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 9.9e-65 250.0 124 92.7
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 92.7
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 1.7e-64 249.2 123 93.5
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 93.5
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 92.7
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 91.9
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 91.9
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 91.9
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 92.7
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 91.9
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 91.9
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 2.9e-64 248.4 124 91.9
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 3.8e-64 248.1 124 92.7
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 3.8e-64 248.1 128 91.4
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 3.8e-64 248.1 124 91.1
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 3.8e-64 248.1 124 92.7
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 3.8e-64 248.1 124 91.9
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 4.9e-64 247.7 124 92.7
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 4.9e-64 247.7 124 91.1
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.4e-64 247.3 124 91.1
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.4e-64 247.3 124 91.1
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 1.1e-63 246.5 124 91.9
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 1.1e-63 246.5 122 92.6
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 1.1e-63 246.5 122 92.6
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 1.1e-63 246.5 124 91.9
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 1.4e-63 246.1 123 91.9
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.4e-63 246.1 124 91.9
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 1.4e-63 246.1 124 91.9
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.4e-63 246.1 124 91.9
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.4e-63 246.1 124 91.9
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.4e-63 246.1 124 91.1
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.4e-63 246.1 128 88.3
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.4e-63 246.1 128 88.3
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 1.9e-63 245.7 128 88.3
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.9e-63 245.7 124 91.1
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 1.9e-63 245.7 128 87.5
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.4e-63 245.4 124 91.1
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 3.2e-63 245.0 124 91.9
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 3.2e-63 245.0 124 91.1
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 3.2e-63 245.0 124 91.1
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 3.2e-63 245.0 128 87.5
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 3.2e-63 245.0 124 89.5
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 3.2e-63 245.0 124 91.9
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 3.2e-63 245.0 124 91.9
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 4.2e-63 244.6 126 87.3
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.2e-63 244.6 124 91.1
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 4.2e-63 244.6 128 89.8
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 4.2e-63 244.6 124 91.9
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 4.2e-63 244.6 125 89.6
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 5.4e-63 244.2 125 89.6
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.3e-63 243.4 124 90.3
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 9.3e-63 243.4 124 90.3
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 9.3e-63 243.4 122 91.8
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 1.2e-62 243.0 124 90.3
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 1.2e-62 243.0 124 91.1
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.7e-62 241.9 124 89.5
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.7e-62 241.9 124 89.5
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 7.9e-62 240.4 124 89.5
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 7.9e-62 240.4 124 89.5
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 7.9e-62 240.4 124 89.5
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 7.9e-62 240.4 122 91.8
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 88.7
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.0e-61 238.4 122 89.3
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 3.0e-61 238.4 122 89.3
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 3.9e-61 238.0 124 88.7
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.9e-61 238.0 122 89.3
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 6.7e-61 237.3 122 87.7
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 8.7e-61 236.9 124 87.1
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 8.7e-61 236.9 124 86.3
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 1.1e-60 236.5 124 85.5
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 2.5e-60 235.3 124 87.1
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 2.5e-60 235.3 124 87.1
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 2.5e-60 235.3 122 89.3
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 2.5e-60 235.3 122 89.3
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 2.5e-60 235.3 124 87.1
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 2.5e-60 235.3 122 89.3
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 3.3e-60 235.0 134 84.3
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 5.6e-60 234.2 122 87.7
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 7.4e-60 233.8 122 88.5
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 7.4e-60 233.8 122 88.5
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 9.6e-60 233.4 124 84.7
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 1.3e-59 233.0 125 86.4
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 1.6e-59 232.6 124 85.5
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 2.1e-59 232.3 125 86.4
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 2.1e-59 232.3 125 86.4
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 2.8e-59 231.9 125 85.6
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 2.8e-59 231.9 122 87.7
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 3.7e-59 231.5 122 87.7
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 3.7e-59 231.5 122 87.7
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 3.7e-59 231.5 122 87.7
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 3.7e-59 231.5 122 87.7
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 3.7e-59 231.5 122 87.7
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 3.7e-59 231.5 124 85.5
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 3.7e-59 231.5 124 85.5
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 3.7e-59 231.5 124 84.7
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 4.8e-59 231.1 149 75.8
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 1.1e-58 229.9 120 86.7
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 1.4e-58 229.6 122 86.9
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 5.3e-58 227.6 155 72.9
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 6.9e-58 227.3 169 68.0
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 1.2e-57 226.5 119 88.2
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 1.5e-57 226.1 119 88.2
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.0e-57 225.7 124 83.9
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 3.4e-57 224.9 122 85.2
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 5.8e-57 224.2 110 90.9
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 7.6e-57 223.8 124 82.3
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 2.2e-56 222.2 128 82.8
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 1.4e-55 219.5 134 77.6
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 3.2e-55 218.4 120 82.5
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.8e-53 212.6 114 86.0
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 3.0e-53 211.8 114 86.0
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 3.0e-53 211.8 112 88.4
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 5.1e-53 211.1 109 88.1
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 3.3e-52 208.4 120 76.7
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 4.3e-52 208.0 122 73.8
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.1e-50 203.4 108 88.0
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.6e-49 197.2 149 67.8
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.8e-43 178.7 100 86.0
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 6.3e-43 177.6 122 73.0
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 4.1e-42 174.9 92 85.9
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 2.6e-41 172.2 85 91.8
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 2.9e-40 168.7 80 95.0
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.1e-39 166.8 84 91.7
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 2.5e-39 165.6 83 90.4
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 4.2e-39 164.9 80 93.8
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 5.5e-39 164.5 80 93.8
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 2.1e-38 162.5 80 92.5
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 3.6e-38 161.8 129 65.1
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 4.6e-38 161.4 123 66.7
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 2.3e-37 159.1 78 94.9
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 3.0e-37 158.7 77 92.2
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 5.1e-37 157.9 80 88.8
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.7e-36 154.5 176 49.4
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 2.8e-35 152.1 108 69.4
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 3.7e-35 151.8 78 91.0
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 1.2e-33 146.7 129 59.7
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 2.0e-33 146.0 78 87.2
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 2.2e-32 142.5 118 60.2
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 4.7e-30 134.8 73 83.6
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 1.0e-29 133.7 64 95.3
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.0e-29 133.7 75 82.7
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 5.9e-25 117.9 56 94.6
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 2.9e-24 115.5 118 53.4
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 2.9e-24 115.5 118 53.4
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 3.6e-22 108.6 56 91.1
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 3.3e-20 102.1 57 84.2
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 3.2e-15 85.5 44 88.6


User provided reference genes

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