Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 6.6e-137 490.7 253 100.0
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 5.3e-94 348.2 242 76.0
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 1.4e-86 323.6 242 69.4
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 7.2e-67 258.1 242 54.1
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 5.2e-65 251.9 243 55.1
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 2.0e-64 250.0 242 55.8
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 2.6e-64 249.6 243 55.6
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 5.7e-64 248.4 242 56.6
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 7.5e-64 248.1 245 55.1
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 7.5e-64 248.1 242 56.2
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 2.8e-63 246.1 243 52.3
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 4.8e-63 245.4 243 53.9
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 1.4e-62 243.8 242 52.9
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 7.0e-62 241.5 246 50.8
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 2.7e-61 239.6 242 50.4
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 5.9e-61 238.4 243 52.3
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 2.2e-60 236.5 200 61.5
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 6.5e-60 235.0 241 50.6
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 1.5e-59 233.8 240 52.1
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 2.5e-59 233.0 244 50.8
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 3.2e-59 232.6 244 50.8
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 5.5e-59 231.9 243 50.2
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 8.0e-58 228.0 243 48.6
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 2.3e-57 226.5 240 49.2
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 3.0e-57 226.1 240 48.8
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 4.0e-57 225.7 242 51.7
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 4.0e-57 225.7 240 48.3
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 6.8e-57 224.9 245 50.2
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 8.8e-57 224.6 240 49.2
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 2.6e-56 223.0 241 51.5
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 3.4e-56 222.6 247 47.8
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 1.3e-55 220.7 239 54.4
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.7e-55 220.3 240 48.3
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 6.3e-55 218.4 217 52.5
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 6.3e-55 218.4 247 46.6
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 6.3e-55 218.4 244 49.2
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 8.3e-55 218.0 244 47.5
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.4e-54 217.2 240 47.9
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 9.1e-54 214.5 243 46.9
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 3.5e-53 212.6 243 46.9
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 3.5e-53 212.6 240 50.0
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 5.9e-53 211.8 245 47.3
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 1.0e-52 211.1 243 47.3
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 1.3e-52 210.7 242 48.3
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 1.3e-52 210.7 243 47.3
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 1.7e-52 210.3 241 45.2
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 6.5e-52 208.4 241 45.6
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 5.5e-51 205.3 200 52.5
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 5.5e-51 205.3 239 46.4
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 7.2e-51 204.9 243 45.3
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 9.5e-51 204.5 242 47.1
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 2.1e-50 203.4 240 50.0
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 8.0e-50 201.4 243 45.7
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 1.0e-49 201.1 243 42.8
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 1.0e-49 201.1 244 45.5
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 3.0e-49 199.5 243 43.6
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 4.4e-48 195.7 242 45.5
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 2.2e-47 193.4 245 44.5
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 2.2e-47 193.4 245 44.1
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 2.8e-47 193.0 243 42.8
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 2.8e-47 193.0 243 42.8
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 3.7e-47 192.6 243 42.0
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 4.9e-47 192.2 243 43.2
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 1.4e-46 190.7 245 43.7
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.8e-46 190.3 229 45.9
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 4.1e-46 189.1 243 42.8
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 2.0e-45 186.8 292 37.7
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 1.0e-44 184.5 185 50.8
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 1.3e-44 184.1 243 42.4
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 1.7e-44 183.7 243 42.4
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 1.7e-44 183.7 243 42.4
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 2.3e-44 183.3 240 44.6
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 5.0e-44 182.2 266 41.0
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 9.5e-43 177.9 241 43.2
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 9.5e-43 177.9 240 42.9
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 1.4e-41 174.1 205 48.3
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 2.0e-40 170.2 240 41.2
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 2.6e-40 169.9 171 49.7
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 7.5e-40 168.3 168 51.8
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 3.7e-39 166.0 249 41.0
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 1.3e-36 157.5 242 37.6
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 2.5e-35 153.3 175 47.4
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.2e-34 151.0 246 38.2
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 1.1e-33 147.9 251 38.6
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 3.1e-33 146.4 242 36.0
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 2.0e-32 143.7 240 35.8
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 1.1e-30 137.9 205 40.5
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 1.2e-29 134.4 184 41.8
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 2.0e-29 133.7 249 34.9
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 4.6e-29 132.5 250 34.4
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.7e-28 130.6 252 34.1
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 5.0e-28 129.0 252 33.7
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 6.6e-28 128.6 252 33.7
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 5.6e-27 125.6 248 33.1
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 6.2e-26 122.1 164 40.9
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 3.4e-24 116.3 176 39.2
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 2.1e-21 107.1 237 32.9
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 6.8e-17 92.0 95 54.7
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 3.3e-11 73.2 77 48.1
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 1.1e-09 68.2 89 44.9
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 4.4e-08 62.8 71 46.5
Peaxi162Scf00289g00039 Petunia axillaris HOM05D007471 ORTHO05D009481 3.2e-06 56.6 57 45.6


User provided reference genes

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