Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.2e-139 500.0 281 100.0
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 4.4e-89 332.0 299 64.2
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 6.8e-50 201.8 231 55.0
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 1.8e-42 177.2 287 44.3
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 6.8e-42 175.3 319 40.4
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 8.9e-42 174.9 274 47.1
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.9e-39 167.2 308 45.8
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 1.3e-37 161.0 299 43.8
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 6.2e-35 152.1 267 43.4
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 8.1e-35 151.8 317 45.4
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 5.8e-33 145.6 348 41.4
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.3e-32 144.4 316 44.0
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 8.4e-32 141.7 270 47.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 2.4e-31 140.2 349 37.2
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 2.4e-31 140.2 216 44.4
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 2.7e-30 136.7 317 36.9
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 7.8e-30 135.2 320 38.8
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.3e-29 134.4 161 55.3
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 3.0e-29 133.3 321 39.9
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 3.0e-29 133.3 330 41.2
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.0e-29 133.3 309 36.6
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 3.9e-29 132.9 225 52.0
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 8.7e-29 131.7 269 46.5
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 1.1e-28 131.3 285 46.0
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.1e-28 131.3 196 46.4
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 1.1e-28 131.3 329 36.8
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.5e-28 131.0 333 43.5
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 2.5e-28 130.2 359 35.1
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 2.5e-28 130.2 204 42.6
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.6e-28 129.0 333 36.6
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 9.6e-28 128.3 295 36.3
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 1.6e-27 127.5 320 40.9
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 6.2e-27 125.6 371 34.2
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.1e-26 124.8 231 38.5
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 1.4e-26 124.4 183 46.4
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.8e-26 124.0 315 36.5
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.8e-26 124.0 157 51.0
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.8e-26 124.0 373 34.0
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.8e-26 124.0 227 41.9
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 2.4e-26 123.6 319 37.9
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 2.4e-26 123.6 388 37.6
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 2.4e-26 123.6 284 38.0
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 2.4e-26 123.6 324 36.4
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 5.2e-26 122.5 335 38.5
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 5.2e-26 122.5 374 33.7
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 5.2e-26 122.5 370 33.5
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.2e-26 122.5 316 36.1
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 5.2e-26 122.5 131 52.7
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 6.9e-26 122.1 368 34.8
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 9.0e-26 121.7 256 38.7
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 2.0e-25 120.6 157 46.5
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.6e-25 120.2 308 40.9
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.4e-25 119.8 245 37.6
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 3.4e-25 119.8 194 42.3
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 3.4e-25 119.8 201 43.3
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 3.4e-25 119.8 358 34.9
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 4.4e-25 119.4 372 33.9
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.8e-25 119.0 298 45.0
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 5.8e-25 119.0 298 44.6
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 7.6e-25 118.6 302 39.1
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 7.6e-25 118.6 336 36.3
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 9.9e-25 118.2 369 33.1
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 9.9e-25 118.2 333 34.8
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 2.2e-24 117.1 358 32.7
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 2.9e-24 116.7 331 33.5
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.9e-24 116.7 356 34.8
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 3.8e-24 116.3 239 37.7
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.8e-24 116.3 343 39.1
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.8e-24 116.3 348 39.9
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 4.9e-24 115.9 224 40.2
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 4.9e-24 115.9 264 36.0
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 6.4e-24 115.5 208 39.9
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 8.4e-24 115.2 325 34.5
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 8.4e-24 115.2 105 59.0
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 8.4e-24 115.2 203 42.9
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 1.1e-23 114.8 243 36.6
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.1e-23 114.8 361 31.3
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.4e-23 114.4 200 41.0
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.9e-23 114.0 118 68.6
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 2.4e-23 113.6 370 35.9
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 2.4e-23 113.6 355 31.3
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.2e-23 113.2 108 53.7
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 3.2e-23 113.2 298 32.9
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 5.4e-23 112.5 294 36.1
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 9.3e-23 111.7 301 37.9
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.2e-22 111.3 354 33.6
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 1.6e-22 110.9 340 36.2
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 2.1e-22 110.5 289 34.3
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 3.5e-22 109.8 291 37.8
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 3.5e-22 109.8 376 31.9
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 1.0e-21 108.2 319 34.5
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.0e-21 108.2 353 33.7
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 1.3e-21 107.8 216 38.4
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.3e-21 107.8 329 32.2
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.3e-21 107.1 108 73.1
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.0e-21 106.7 189 41.8
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 5.1e-21 105.9 285 33.7
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 6.6e-21 105.5 174 42.5
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 6.6e-21 105.5 226 41.2
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 1.9e-20 104.0 350 29.1
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 2.5e-20 103.6 372 29.0
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.5e-20 103.6 128 46.1
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 2.5e-20 103.6 120 50.0
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.3e-20 103.2 336 35.1
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.3e-20 103.2 281 34.2
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 5.6e-20 102.4 354 31.6
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.6e-20 102.4 222 37.4
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 7.3e-20 102.1 101 62.4
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 7.3e-20 102.1 91 57.1
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 2.1e-19 100.5 104 52.9
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 2.1e-19 100.5 101 52.5
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 2.1e-19 100.5 101 52.5
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 2.1e-19 100.5 341 38.4
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 2.8e-19 100.1 102 52.0
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 2.8e-19 100.1 102 52.0
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 2.8e-19 100.1 111 49.5
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.1e-18 98.2 183 40.4
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 1.8e-18 97.4 336 33.0
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 2.4e-18 97.1 319 31.0
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 3.1e-18 96.7 232 36.6
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 4.0e-18 96.3 287 34.5
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.0e-18 96.3 111 47.7
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.0e-18 96.3 111 47.7
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 5.3e-18 95.9 53 79.2
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 6.9e-18 95.5 90 55.6
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 6.9e-18 95.5 99 51.5
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 9.0e-18 95.1 160 41.2
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.6e-17 93.6 61 70.5
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.6e-17 93.6 120 45.0
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 3.4e-17 93.2 286 32.5
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.8e-17 92.4 83 57.8
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 7.6e-17 92.0 169 37.9
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 7.6e-17 92.0 293 32.1
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 7.6e-17 92.0 354 31.9
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 9.9e-17 91.7 201 34.3
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.3e-16 91.3 61 68.9
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.7e-16 90.9 206 34.0
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.7e-16 90.9 97 62.9
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 2.2e-16 90.5 93 61.3
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 2.2e-16 90.5 206 34.0
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.2e-16 90.5 332 36.1
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 4.9e-16 89.4 204 38.7
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 6.4e-16 89.0 41 92.7
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 8.4e-16 88.6 51 70.6
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.4e-15 87.8 41 90.2
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 2.4e-15 87.0 283 31.8
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 2.4e-15 87.0 206 40.3
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 3.2e-15 86.7 128 40.6
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.2e-15 86.7 355 31.3
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.3e-13 81.3 284 30.3
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.3e-13 80.5 286 30.1
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 3.0e-13 80.1 286 30.4
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 3.0e-13 80.1 286 30.1
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 3.0e-13 80.1 286 30.4
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 3.0e-13 80.1 286 30.4
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 6.7e-13 79.0 50 68.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 9.6e-12 75.1 131 35.1
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.4e-10 70.5 65 53.8
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.0e-10 69.7 96 40.6
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 6.9e-10 68.9 37 75.7
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 1.2e-09 68.2 91 42.9
Migut.J01845 Erythranthe guttata HOM05D003648 ORTHO05D004267 2.6e-09 67.0 96 53.1
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 9.9e-09 65.1 48 64.6
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 2.4e-07 60.5 297 27.6
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 1.2e-06 58.2 118 38.1
Potri.016G059400 Populus trichocarpa HOM05D014635 ORTHO05D014310 2.1e-06 57.4 118 33.9
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.7e-06 57.0 159 30.2


User provided reference genes

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