Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.8e-128 462.6 234 100.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 5.6e-66 255.0 205 69.8
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 5.1e-59 231.9 205 63.9
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 6.7e-59 231.5 200 62.5
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.1e-52 209.9 216 58.3
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 6.1e-52 208.4 198 60.6
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.5e-50 203.0 191 61.3
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 7.4e-50 201.4 210 54.3
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.6e-49 200.3 200 57.0
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 3.7e-49 199.1 207 58.0
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 6.3e-49 198.4 197 55.3
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.1e-48 197.6 199 55.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 2.6e-47 193.0 195 57.9
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 5.9e-47 191.8 197 54.3
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.7e-46 190.3 203 53.7
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.8e-46 189.1 213 52.6
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 3.8e-46 189.1 223 50.7
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.5e-46 188.3 200 54.5
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 8.5e-46 188.0 202 54.5
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.1e-45 187.6 206 52.9
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 3.2e-45 186.0 187 54.5
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.2e-44 184.1 201 53.2
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.6e-44 183.7 197 55.3
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-44 183.7 198 57.6
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-44 183.7 198 57.6
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.1e-44 183.3 200 53.5
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 4.6e-44 182.2 212 51.9
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.3e-43 179.9 207 52.7
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 8.8e-43 177.9 215 52.6
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 2.0e-42 176.8 200 51.5
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.7e-42 175.3 202 53.5
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 9.7e-42 174.5 208 51.0
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.7e-42 174.5 202 53.5
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 9.7e-42 174.5 184 54.9
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.2e-41 173.3 209 51.7
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.3e-41 171.8 197 52.8
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 6.3e-41 171.8 211 48.8
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 8.2e-41 171.4 177 54.2
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.1e-40 171.0 196 50.0
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.4e-40 170.6 208 50.5
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-40 170.2 197 52.3
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.4e-40 169.9 197 52.3
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 3.1e-40 169.5 196 51.0
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.1e-40 169.1 191 51.3
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 7.7e-39 164.9 170 58.8
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.9e-38 162.9 182 51.6
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.8e-38 162.5 205 50.2
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.8e-38 162.5 205 50.2
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.5e-38 161.8 205 50.7
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 1.4e-37 160.6 177 50.3
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.4e-37 160.6 216 50.5
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.4e-37 160.6 187 52.4
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 2.5e-37 159.8 199 49.2
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 2.5e-37 159.8 200 50.5
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.2e-37 159.5 215 49.8
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 4.2e-37 159.1 206 46.6
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 4.2e-37 159.1 185 50.8
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 9.4e-37 157.9 210 47.6
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-36 157.5 216 49.1
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-36 157.1 155 54.2
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.7e-36 156.4 203 45.3
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 3.6e-36 156.0 216 49.5
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.6e-36 156.0 216 49.5
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.6e-36 156.0 216 49.5
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 6.1e-36 155.2 214 47.2
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 7.9e-36 154.8 209 47.4
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.4e-35 154.1 179 53.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.4e-35 154.1 183 50.3
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 5.2e-35 152.1 216 47.7
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 8.8e-35 151.4 201 49.8
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 2.6e-34 149.8 203 47.8
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 3.3e-34 149.4 208 48.6
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 7.4e-34 148.3 205 47.3
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.7e-33 147.1 195 48.2
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.1e-32 144.4 200 44.0
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 2.4e-32 143.3 186 47.3
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.1e-32 142.9 191 46.1
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.1e-32 142.9 175 46.3
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 5.3e-32 142.1 189 50.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-31 141.0 200 46.5
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.0e-31 140.2 206 47.6
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.0e-31 140.2 205 43.9
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 3.5e-31 139.4 209 42.1
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 4.5e-31 139.0 234 41.0
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.2e-30 136.7 198 44.4
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 2.2e-30 136.7 195 44.6
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.2e-30 136.7 177 49.2
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 5.0e-30 135.6 215 43.3
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 5.0e-30 135.6 206 44.7
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-29 134.0 192 42.7
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.5e-29 134.0 185 43.8
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.9e-29 133.7 191 42.4
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.9e-29 133.7 186 46.2
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 2.5e-29 133.3 186 43.0
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.5e-29 133.3 190 41.6
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.2e-29 132.9 208 42.8
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 4.2e-29 132.5 186 43.5
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 4.2e-29 132.5 218 44.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 5.5e-29 132.1 178 42.7
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 7.2e-29 131.7 206 43.2
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 7.2e-29 131.7 217 44.2
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.2e-28 131.0 177 43.5
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.6e-28 130.6 201 40.3
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.6e-28 130.6 198 46.0
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-28 130.2 177 43.5
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.1e-28 130.2 200 44.5
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 4.7e-28 129.0 121 58.7
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.0e-27 127.9 180 42.8
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.8e-27 127.1 209 42.1
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.8e-27 127.1 195 43.1
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.0e-27 126.3 210 42.4
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 3.0e-27 126.3 233 39.5
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 3.0e-27 126.3 212 42.5
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.0e-27 126.3 215 42.3
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 4.0e-27 125.9 206 41.7
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.2e-27 125.6 179 42.5
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 6.7e-27 125.2 179 43.6
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 6.7e-27 125.2 200 43.0
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 8.8e-27 124.8 183 41.0
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-26 124.4 178 41.6
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.5e-26 124.0 195 41.0
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.0e-26 123.6 189 41.3
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.0e-26 123.6 179 42.5
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-26 123.2 197 44.2
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.3e-26 122.9 182 44.0
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 3.3e-26 122.9 222 41.0
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 4.4e-26 122.5 203 41.9
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 5.7e-26 122.1 211 43.6
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 5.7e-26 122.1 212 40.6
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 7.5e-26 121.7 208 41.8
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 9.7e-26 121.3 178 41.6
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 9.7e-26 121.3 118 56.8
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.7e-25 120.6 208 41.3
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 3.7e-25 119.4 169 41.4
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.7e-25 119.4 208 40.4
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 4.8e-25 119.0 169 42.6
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 6.3e-25 118.6 212 42.0
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 8.2e-25 118.2 111 56.8
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.1e-24 117.9 216 39.4
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.4e-24 117.5 154 46.8
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.8e-24 117.1 147 45.6
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.1e-24 115.9 181 40.3
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.1e-24 115.9 205 40.0
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.6e-23 114.0 146 45.9
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 3.5e-23 112.8 175 39.4
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 3.5e-23 112.8 186 41.4
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 4.5e-23 112.5 211 38.9
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 5.9e-23 112.1 217 38.7
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 5.9e-23 112.1 217 38.7
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 7.7e-23 111.7 218 38.5
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 7.7e-23 111.7 188 41.0
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.0e-22 111.3 175 41.1
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 2.9e-22 109.8 223 39.5
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.0e-22 109.0 244 36.5
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 5.5e-21 105.5 204 37.3
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 7.2e-21 105.1 167 41.9
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.4e-19 100.9 140 42.1
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.3e-19 100.1 185 38.9
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 5.2e-19 99.0 187 38.5
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 6.8e-19 98.6 188 38.3
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 6.8e-19 98.6 222 37.4
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-18 97.4 187 38.0
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.5e-18 97.4 136 41.2
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 4.4e-18 95.9 185 37.8
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 4.4e-18 95.9 185 40.0
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 5.7e-18 95.5 192 39.1
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 7.5e-18 95.1 135 41.5
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.3e-17 94.4 132 47.0
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.2e-17 93.6 184 38.6
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.7e-17 92.8 189 38.6
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.7e-17 92.8 185 39.5
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 3.7e-17 92.8 208 39.4
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.4e-16 90.9 132 42.4
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.4e-16 89.0 274 31.8
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.4e-16 89.0 112 46.4
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.0e-14 84.7 120 46.7
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 6.5e-14 82.0 162 32.7
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.5e-13 80.1 161 31.7
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.5e-13 80.1 100 43.0
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.1e-12 77.0 125 43.2
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 6.8e-11 72.0 66 57.6
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.6e-10 70.1 151 33.8
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 8.3e-09 65.1 209 27.3
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 2.0e-07 60.5 130 33.8


User provided reference genes

Program Settings