Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 1.5e-92 342.8 166 100.0
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 2.7e-54 215.7 116 90.5
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.5e-52 209.9 117 87.2
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 3.4e-49 198.7 118 80.5
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 2.9e-48 195.7 116 81.0
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.2e-46 190.3 141 69.5
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.6e-46 189.9 107 80.4
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.6e-46 189.9 107 80.4
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 2.1e-46 189.5 113 77.9
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 2.7e-46 189.1 110 77.3
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 3.5e-46 188.7 114 74.6
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.0e-45 187.2 111 78.4
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 5.1e-45 184.9 115 78.3
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 5.1e-45 184.9 108 76.9
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 6.6e-45 184.5 123 70.7
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.1e-44 183.7 111 76.6
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.1e-44 183.7 108 75.9
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 2.5e-44 182.6 108 79.6
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 9.6e-44 180.6 107 77.6
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.1e-43 179.5 105 78.1
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 6.2e-43 177.9 113 71.7
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 6.2e-43 177.9 131 66.4
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 6.2e-43 177.9 102 79.4
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 8.1e-43 177.6 103 77.7
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 8.1e-43 177.6 114 74.6
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 8.1e-43 177.6 106 77.4
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 1.8e-42 176.4 98 80.6
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.4e-42 176.0 102 79.4
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 5.3e-42 174.9 125 69.6
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 5.3e-42 174.9 109 74.3
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 6.9e-42 174.5 111 73.9
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 6.9e-42 174.5 114 71.9
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 6.9e-42 174.5 112 73.2
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 9.0e-42 174.1 144 61.1
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 9.0e-42 174.1 111 73.9
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.2e-41 173.7 137 67.2
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.5e-41 173.3 112 72.3
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.0e-41 172.9 101 77.2
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 2.0e-41 172.9 124 66.9
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 2.6e-41 172.6 111 73.0
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 2.6e-41 172.6 94 83.0
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 2.6e-41 172.6 108 74.1
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 3.4e-41 172.2 92 82.6
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 4.5e-41 171.8 101 76.2
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 5.8e-41 171.4 111 70.3
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 9.9e-41 170.6 101 76.2
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 9.9e-41 170.6 112 71.4
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 9.9e-41 170.6 112 71.4
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 9.9e-41 170.6 112 71.4
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.3e-40 170.2 94 81.9
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.7e-40 169.9 107 75.7
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.2e-40 169.5 94 80.9
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.2e-40 169.5 110 72.7
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 2.2e-40 169.5 105 74.3
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 2.9e-40 169.1 98 78.6
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 4.9e-40 168.3 116 73.3
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 6.4e-40 167.9 98 78.6
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 6.4e-40 167.9 97 76.3
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 8.4e-40 167.5 101 77.2
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 8.4e-40 167.5 102 77.5
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 1.1e-39 167.2 115 72.2
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.4e-39 166.8 107 70.1
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 1.4e-39 166.8 101 76.2
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.9e-39 166.4 94 79.8
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 2.4e-39 166.0 106 73.6
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 5.4e-39 164.9 130 60.0
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 5.4e-39 164.9 107 71.0
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 5.4e-39 164.9 104 74.0
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 7.1e-39 164.5 119 70.6
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 7.1e-39 164.5 110 72.7
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 7.1e-39 164.5 112 68.8
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 9.3e-39 164.1 97 78.4
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 9.3e-39 164.1 104 73.1
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 1.2e-38 163.7 101 76.2
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 1.6e-38 163.3 117 67.5
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 1.6e-38 163.3 117 67.5
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.6e-38 163.3 117 67.5
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.6e-38 163.3 114 70.2
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.1e-38 162.9 95 74.7
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.1e-38 162.9 110 70.0
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.5e-38 162.2 114 70.2
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 3.5e-38 162.2 113 69.0
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 4.6e-38 161.8 112 68.8
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.6e-38 161.8 106 71.7
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 6.0e-38 161.4 114 70.2
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 6.0e-38 161.4 114 68.4
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.0e-37 160.6 114 68.4
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 1.3e-37 160.2 114 64.9
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.3e-37 160.2 117 66.7
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.3e-37 160.2 105 72.4
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.3e-37 160.2 105 71.4
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.3e-37 160.2 105 71.4
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 1.8e-37 159.8 106 73.6
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 1.8e-37 159.8 106 73.6
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.8e-37 159.8 114 67.5
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.3e-37 159.5 114 67.5
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 2.3e-37 159.5 114 67.5
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 3.0e-37 159.1 114 67.5
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 3.0e-37 159.1 105 69.5
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.9e-37 158.7 114 67.5
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 3.9e-37 158.7 115 67.8
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 3.9e-37 158.7 105 72.4
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 3.9e-37 158.7 114 69.3
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 5.1e-37 158.3 104 73.1
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 5.1e-37 158.3 104 73.1
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.1e-37 158.3 86 80.2
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 8.7e-37 157.5 105 71.4
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 8.7e-37 157.5 107 69.2
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 8.7e-37 157.5 103 71.8
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 1.5e-36 156.8 104 73.1
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.5e-36 156.8 86 79.1
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.5e-36 156.8 86 79.1
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.5e-36 156.8 86 79.1
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 1.5e-36 156.8 110 68.2
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.9e-36 156.4 86 80.2
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.9e-36 156.4 86 79.1
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 4.3e-36 155.2 110 68.2
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 4.3e-36 155.2 110 68.2
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 5.6e-36 154.8 83 81.9
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 5.6e-36 154.8 105 70.5
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 7.4e-36 154.5 110 65.5
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.1e-35 152.9 77 83.1
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 2.1e-35 152.9 80 82.5
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 3.7e-35 152.1 114 64.9
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 6.2e-35 151.4 97 71.1
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 8.1e-35 151.0 91 72.5
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.4e-34 150.2 110 64.5
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 3.1e-34 149.1 101 69.3
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 4.0e-34 148.7 83 79.5
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.2e-33 147.1 92 71.7
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.5e-33 146.7 105 64.8
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 3.4e-33 145.6 133 54.9
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 3.4e-33 145.6 77 83.1
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 5.8e-33 144.8 114 63.2
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 1.0e-32 144.1 87 74.7
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 1.3e-32 143.7 80 77.5
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 2.9e-32 142.5 105 64.8
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.3e-29 133.7 122 55.7
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 3.9e-29 132.1 81 71.6
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 8.7e-29 131.0 110 55.5
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.9e-28 129.8 110 55.5
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 7.6e-25 117.9 64 84.4
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 4.2e-23 112.1 93 55.9
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 1.0e-21 107.5 77 66.2
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 6.7e-21 104.8 94 54.3
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 8.7e-21 104.4 106 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 2.8e-19 99.4 100 50.0
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.7e-19 99.0 69 59.4
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 2.0e-17 93.2 104 50.0
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 4.5e-17 92.0 58 70.7
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 4.5e-17 92.0 61 72.1
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 9.4e-15 84.3 57 68.4
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 7.9e-14 81.3 73 49.3
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 6.7e-13 78.2 65 61.5
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.3e-11 73.9 100 42.0
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 2.5e-07 59.7 64 50.0
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 4.7e-06 55.5 58 46.6


User provided reference genes

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