Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 8.0e-115 417.5 283 100.0
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 1.4e-55 220.7 286 63.6
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 3.5e-46 189.5 290 65.5
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.3e-45 186.8 286 66.4
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 5.1e-45 185.7 283 65.0
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 3.6e-43 179.5 289 64.0
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.1e-42 177.9 295 63.7
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 2.4e-42 176.8 297 58.2
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.5e-41 174.1 295 59.3
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 1.5e-41 174.1 295 59.3
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 2.0e-41 173.7 310 61.9
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.4e-41 172.9 307 61.2
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.8e-41 172.2 312 60.3
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 7.6e-41 171.8 294 59.9
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 7.6e-41 171.8 290 62.1
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 7.6e-41 171.8 279 67.4
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 9.9e-41 171.4 292 64.0
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.3e-40 171.0 312 59.9
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.7e-40 170.6 300 62.3
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.2e-40 170.2 284 64.4
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 2.9e-40 169.9 310 61.3
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.9e-40 169.9 310 61.3
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.8e-40 169.5 312 59.9
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.4e-40 168.7 298 60.7
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 6.4e-40 168.7 256 65.2
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 8.4e-40 168.3 294 55.8
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 8.4e-40 168.3 276 65.9
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.9e-39 167.2 319 59.2
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.2e-39 166.4 285 64.2
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 7.1e-39 165.2 295 61.7
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 7.1e-39 165.2 275 65.8
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 7.1e-39 165.2 314 59.9
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.1e-38 163.7 294 62.2
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 2.1e-38 163.7 287 58.9
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.7e-38 163.3 274 65.0
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.5e-38 162.9 258 67.8
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 3.5e-38 162.9 258 67.8
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 4.6e-38 162.5 274 62.8
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 6.0e-38 162.2 266 66.2
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 7.9e-38 161.8 218 50.5
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 7.9e-38 161.8 214 53.7
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 7.9e-38 161.8 294 60.9
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.0e-37 161.4 195 54.9
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 1.3e-37 161.0 274 66.1
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.8e-37 160.6 272 52.9
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 1.8e-37 160.6 254 63.4
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.3e-37 160.2 271 63.8
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 3.0e-37 159.8 301 57.8
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 3.9e-37 159.5 214 51.9
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.1e-36 157.9 261 65.5
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 5.6e-36 155.6 267 54.7
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 9.6e-36 154.8 276 60.5
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.3e-35 154.5 276 61.2
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.1e-35 153.7 258 66.3
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 3.7e-35 152.9 218 50.9
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 3.7e-35 152.9 296 60.1
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 4.8e-35 152.5 276 61.6
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 4.8e-35 152.5 268 65.7
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 6.2e-35 152.1 193 53.9
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 8.1e-35 151.8 269 63.6
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 1.4e-34 151.0 259 63.7
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 2.4e-34 150.2 280 62.5
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 3.1e-34 149.8 272 63.6
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.1e-34 149.8 301 58.1
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 4.0e-34 149.4 298 59.4
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 6.9e-34 148.7 263 63.5
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.2e-33 147.9 307 57.0
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 2.0e-33 147.1 300 58.3
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 2.6e-33 146.7 252 66.7
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 7.6e-33 145.2 298 59.1
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 7.6e-33 145.2 258 58.9
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.9e-32 143.3 276 62.0
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 4.9e-32 142.5 262 65.3
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 6.4e-32 142.1 296 56.1
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 8.4e-32 141.7 265 63.4
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 3.2e-31 139.8 242 63.6
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 4.2e-31 139.4 283 59.0
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 4.2e-31 139.4 259 62.9
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 5.5e-31 139.0 199 53.3
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 5.5e-31 139.0 316 55.4
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 5.5e-31 139.0 192 52.1
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 9.3e-31 138.3 302 56.6
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 2.1e-30 137.1 283 61.8
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 2.1e-30 137.1 275 60.4
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 2.1e-30 137.1 269 59.5
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 2.7e-30 136.7 251 51.0
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 2.7e-30 136.7 272 62.1
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.7e-30 136.7 268 60.8
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 3.5e-30 136.3 290 58.3
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 7.9e-30 135.2 221 48.0
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 7.9e-30 135.2 174 51.1
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 2.3e-29 133.7 312 55.1
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 2.3e-29 133.7 304 53.6
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 5.1e-29 132.5 283 58.7
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 6.7e-29 132.1 291 48.1
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 6.7e-29 132.1 315 54.0
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.5e-28 131.0 301 56.1
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.9e-28 130.6 216 71.3
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.9e-28 130.6 294 58.2
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 3.3e-28 129.8 271 57.2
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.3e-28 129.8 319 55.5
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 3.3e-28 129.8 188 50.5
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 3.3e-28 129.8 284 58.1
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 5.6e-28 129.0 266 56.8
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.1e-27 127.1 278 58.3
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 2.1e-27 127.1 300 53.7
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.8e-27 126.7 265 60.4
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 2.8e-27 126.7 284 50.0
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 3.7e-27 126.3 276 56.2
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 6.2e-27 125.6 271 57.6
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 6.2e-27 125.6 273 59.3
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.4e-26 124.4 197 49.2
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.4e-26 124.4 286 55.9
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 3.1e-26 123.2 267 47.2
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 3.1e-26 123.2 267 47.2
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 3.1e-26 123.2 273 58.6
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 4.0e-26 122.9 280 58.2
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 4.0e-26 122.9 310 41.0
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 9.0e-26 121.7 276 56.2
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 9.0e-26 121.7 291 55.0
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 1.5e-25 120.9 278 55.8
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 1.5e-25 120.9 278 55.8
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 1.5e-25 120.9 278 55.8
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 3.4e-25 119.8 291 57.4
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 4.5e-25 119.4 267 55.4
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 4.5e-25 119.4 267 55.4
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 5.8e-25 119.0 298 56.0
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.3e-24 117.9 279 55.9
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 1.7e-24 117.5 278 56.1
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 2.2e-24 117.1 272 60.7
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.2e-24 117.1 158 53.2
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 2.2e-24 117.1 292 52.4
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 2.9e-24 116.7 278 55.4
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 6.5e-24 115.5 278 56.8
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.1e-23 114.8 275 48.0
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.1e-23 114.8 211 43.6
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.9e-23 114.0 285 54.4
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 3.2e-23 113.2 260 53.8
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 4.2e-23 112.8 319 50.2
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 7.1e-23 112.1 276 56.2
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 9.3e-23 111.7 213 42.3
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.2e-22 111.3 272 57.7
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 2.7e-22 110.2 128 56.2
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.7e-22 110.2 266 52.3
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 4.6e-22 109.4 251 60.6
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 4.6e-22 109.4 268 55.6
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 7.9e-22 108.6 185 41.1
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.3e-21 107.8 328 48.2
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.3e-19 101.3 167 77.2
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.8e-18 97.4 254 34.3
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 3.1e-18 96.7 312 51.6
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 4.1e-18 96.3 264 50.8
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.0e-17 94.0 143 51.0
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 7.7e-17 92.0 126 49.2
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.1e-15 88.2 265 51.3
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 2.5e-15 87.0 271 39.1
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 5.5e-15 85.9 281 47.7
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 1.0e-13 81.6 225 44.0
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.4e-13 81.3 263 37.3
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 3.3e-12 76.6 294 49.0
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 3.1e-10 70.1 42 83.3
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 4.1e-10 69.7 126 49.2
HPP92_019616 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.2e-09 68.2 86 46.5
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 2.6e-09 67.0 84 53.6
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.0e-08 65.1 88 50.0
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 6.5e-08 62.4 106 41.5
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 1.1e-07 61.6 42 73.8
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 1.4e-07 61.2 175 62.9


User provided reference genes

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