Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 2.3e-120 435.6 230 100.0
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 5.7e-95 351.3 230 79.6
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 1.4e-93 346.7 232 78.9
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 7.7e-92 340.9 232 77.6
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 2.2e-91 339.3 230 77.0
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 5.0e-91 338.2 230 76.1
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 6.5e-91 337.8 231 76.2
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.4e-90 336.7 230 75.2
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 2.5e-90 335.9 230 74.8
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 3.2e-90 335.5 230 76.1
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 7.2e-90 334.3 230 73.9
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 2.1e-89 332.8 230 76.1
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 3.0e-88 328.9 230 74.3
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.2e-88 328.2 231 74.5
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 6.7e-88 327.8 230 73.9
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.0e-87 326.2 230 74.3
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 5.7e-87 324.7 230 71.7
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 7.4e-87 324.3 230 73.9
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 1.3e-86 323.6 230 74.3
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.7e-86 323.2 230 71.3
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 2.8e-86 322.4 230 73.5
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 1.1e-85 320.5 230 69.6
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 1.4e-85 320.1 230 71.7
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 1.8e-85 319.7 230 72.6
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 2.4e-85 319.3 230 71.7
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 4.1e-85 318.5 231 72.7
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 4.1e-85 318.5 230 71.3
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 5.3e-85 318.2 230 71.3
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 2.6e-84 315.8 230 72.2
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 2.6e-84 315.8 230 70.4
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 3.5e-84 315.5 230 70.9
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.7e-83 313.2 230 70.9
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 1.7e-83 313.2 230 71.7
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 2.2e-83 312.8 229 72.1
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 2.2e-83 312.8 263 63.9
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 2.9e-83 312.4 230 70.4
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.9e-83 312.4 230 70.9
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 3.8e-83 312.0 230 71.3
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 6.5e-83 311.2 230 69.1
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 8.5e-83 310.8 230 70.0
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.9e-82 309.7 230 69.6
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 3.2e-82 308.9 230 70.0
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 5.5e-82 308.1 230 69.6
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 7.2e-82 307.8 230 69.1
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 9.4e-82 307.4 230 68.7
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 9.4e-82 307.4 230 66.5
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.6e-81 306.6 230 68.3
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 2.1e-81 306.2 230 68.3
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.7e-81 305.8 230 70.0
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 6.1e-81 304.7 232 69.0
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 6.1e-81 304.7 230 67.8
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 1.0e-80 303.9 230 70.0
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 1.4e-80 303.5 232 68.5
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 1.8e-80 303.1 239 66.9
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 2.3e-80 302.8 230 66.5
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 5.2e-80 301.6 250 66.0
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 5.2e-80 301.6 215 74.9
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 6.7e-80 301.2 230 66.1
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.2e-79 300.4 230 67.8
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 1.2e-79 300.4 230 67.8
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 1.5e-79 300.1 230 67.0
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 2.0e-79 299.7 230 68.7
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 5.7e-79 298.1 230 67.8
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 7.5e-79 297.7 230 67.8
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 9.7e-79 297.4 232 68.5
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.3e-78 297.0 230 67.4
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 2.2e-78 296.2 230 67.8
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 2.8e-78 295.8 230 67.0
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 1.4e-77 293.5 230 66.5
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 2.4e-77 292.7 231 67.1
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 3.1e-77 292.4 230 67.0
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 5.3e-77 291.6 252 61.1
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 5.3e-77 291.6 218 69.7
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 1.6e-76 290.0 230 65.2
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 2.0e-76 289.7 230 67.4
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 2.7e-76 289.3 230 65.2
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 3.5e-76 288.9 230 64.3
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 3.5e-76 288.9 230 64.3
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 5.9e-76 288.1 254 64.6
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 1.0e-75 287.3 230 63.9
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 1.7e-75 286.6 231 65.4
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 2.2e-75 286.2 230 63.5
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 3.8e-75 285.4 230 63.5
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 3.8e-75 285.4 307 55.4
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 3.8e-75 285.4 230 65.2
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 5.0e-75 285.0 230 63.5
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 8.5e-75 284.3 230 63.0
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 8.5e-75 284.3 230 64.8
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 1.1e-74 283.9 230 63.0
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 1.1e-74 283.9 230 63.0
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.5e-74 283.5 230 64.3
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 1.9e-74 283.1 230 63.0
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 3.2e-74 282.3 230 62.6
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 7.2e-74 281.2 230 62.6
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 2.1e-73 279.6 230 63.5
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 2.1e-73 279.6 230 62.6
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 2.1e-73 279.6 230 64.3
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.4e-72 276.9 218 66.1
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 1.8e-72 276.6 230 61.7
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 5.2e-72 275.0 230 64.3
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 5.2e-72 275.0 230 63.0
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 6.8e-72 274.6 230 61.7
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.7e-70 270.0 236 61.4
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.8e-70 269.2 216 64.4
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 1.1e-69 267.3 360 47.2
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 2.3e-64 249.6 230 59.1
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 3.0e-64 249.2 318 50.6
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 2.0e-63 246.5 213 59.2
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.5e-60 235.7 182 65.4
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 1.9e-58 229.9 164 72.0
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 3.3e-58 229.2 177 66.7
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.3e-58 228.0 164 72.0
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 2.1e-57 226.5 230 51.3
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.2e-55 220.7 140 78.6
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 4.4e-55 218.8 231 52.4
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 9.8e-55 217.6 230 52.2
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 2.2e-54 216.5 141 77.3
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 2.4e-53 213.0 166 64.5
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 6.0e-52 208.4 282 46.5
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.4e-48 197.2 164 62.2
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 3.1e-48 196.1 229 52.0
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 5.8e-47 191.8 116 81.9
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.7e-46 190.3 138 66.7
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 6.4e-46 188.3 234 46.6
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 2.4e-45 186.4 111 84.7
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 4.6e-44 182.2 245 48.6
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 4.6e-44 182.2 149 62.4
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 8.9e-40 167.9 245 45.7
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 9.9e-39 164.5 176 51.1
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 2.9e-38 162.9 266 41.7
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 7.1e-37 158.3 139 59.0
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.6e-36 157.1 217 44.7
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 3.0e-35 152.9 139 56.8
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 5.1e-35 152.1 157 52.2
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 4.0e-32 142.5 293 36.9
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 6.4e-30 135.2 137 51.1
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 4.3e-26 122.5 92 64.1
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 2.4e-24 116.7 122 53.3
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 2.9e-22 109.8 131 49.6
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 7.1e-21 105.1 78 66.7
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 2.5e-18 96.7 85 63.5
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 9.6e-18 94.7 97 54.6
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 9.6e-18 94.7 72 65.3
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 6.2e-17 92.0 71 60.6
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 5.3e-16 89.0 77 61.0
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 5.3e-16 89.0 106 50.9
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 1.5e-15 87.4 63 63.5
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.7e-14 84.0 125 42.4
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 6.4e-14 82.0 65 63.1
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 1.4e-13 80.9 129 37.2
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 5.4e-13 79.0 54 74.1
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 7.1e-13 78.6 100 45.0
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 4.6e-12 75.9 58 65.5
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 1.1e-10 71.2 61 54.1
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 1.3e-09 67.8 41 78.0
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 9.0e-08 61.6 38 71.1
Gohir.A12G148851 Gossypium hirsutum HOM05D004531 ORTHO05D005484 8.4e-06 55.1 62 56.5


User provided reference genes

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