Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6325 Avicennia marina HOM05D000092 ORTHO05D011915 2.4e-63 245.4 123 100.0
MSTRG.6324 Avicennia marina HOM05D000092 ORTHO05D000042 3.3e-57 224.9 123 93.5
MSTRG.19804 Avicennia marina HOM05D000092 ORTHO05D000042 3.6e-19 98.6 118 44.9
MSTRG.6353 Avicennia marina HOM05D000092 ORTHO05D011915 4.3e-17 91.7 107 49.5
MSTRG.5986 Avicennia marina HOM05D000092 ORTHO05D000042 1.1e-15 87.0 109 45.9
Lj5C773G9 Lonicera japonica HOM05D000092 ORTHO05D000042 9.1e-15 84.0 109 39.4
Lj5C775T1 Lonicera japonica HOM05D000092 ORTHO05D000042 4.5e-14 81.6 109 40.4
Lj5C804T6 Lonicera japonica HOM05D000092 ORTHO05D000042 4.5e-14 81.6 109 38.5
Lj5C706G1 Lonicera japonica HOM05D000092 ORTHO05D000042 5.9e-14 81.3 109 40.4
Lj5A772G60 Lonicera japonica HOM05D000092 ORTHO05D000042 1.0e-13 80.5 109 39.4
Lj5A774G52 Lonicera japonica HOM05D000092 ORTHO05D000042 1.0e-13 80.5 109 39.4
Lj5C699T3 Lonicera japonica HOM05D000092 ORTHO05D000042 1.7e-13 79.7 109 38.5
Lj5C707G1 Lonicera japonica HOM05D000092 ORTHO05D000042 1.7e-13 79.7 109 39.4
vmacro23054 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 3.8e-13 78.6 105 39.0
Lj5C779T0 Lonicera japonica HOM05D000092 ORTHO05D000042 5.0e-13 78.2 109 37.6
Lj5C806T3 Lonicera japonica HOM05D000092 ORTHO05D000042 5.0e-13 78.2 109 39.4
Lj5C807T3 Lonicera japonica HOM05D000092 ORTHO05D000042 5.0e-13 78.2 111 37.8
Lj5C778T2 Lonicera japonica HOM05D000092 ORTHO05D000042 6.5e-13 77.8 109 37.6
Lj5C777T3 Lonicera japonica HOM05D000092 ORTHO05D000042 8.5e-13 77.4 100 41.0
Lj5A808T14 Lonicera japonica HOM05D000092 ORTHO05D011915 1.4e-12 76.6 79 43.0
Lj5C706T3 Lonicera japonica HOM05D000092 ORTHO05D000042 1.9e-12 76.3 109 38.5
Lj6C205T0 Lonicera japonica HOM05D000092 ORTHO05D000042 4.2e-12 75.1 118 34.7
Lj6C184T1 Lonicera japonica HOM05D000092 ORTHO05D000042 5.5e-12 74.7 118 35.6
Lj4C322T3 Lonicera japonica HOM05D000092 ORTHO05D000042 7.2e-12 74.3 110 35.5
Dinv02874 Davidia involucrata HOM05D000092 ORTHO05D000042 1.2e-11 73.6 107 37.4
Lj5C803T8 Lonicera japonica HOM05D000092 ORTHO05D000042 1.6e-11 73.2 109 35.8
Rhsim02G0094400 Rhododendron simsii HOM05D000092 ORTHO05D000042 1.6e-11 73.2 108 38.0
Lj4C326T2 Lonicera japonica HOM05D000092 ORTHO05D000042 2.1e-11 72.8 108 36.1
Lj4C322T4 Lonicera japonica HOM05D000092 ORTHO05D000042 2.7e-11 72.4 110 34.5
Rhsim03G0022500 Rhododendron simsii HOM05D000092 ORTHO05D000042 3.6e-11 72.0 109 37.6
Lj5C698T4 Lonicera japonica HOM05D000092 ORTHO05D000042 4.7e-11 71.6 109 36.7
Lj1C1098T2 Lonicera japonica HOM05D000092 ORTHO05D000042 6.1e-11 71.2 116 36.2
Rhsim02G0094000 Rhododendron simsii HOM05D000092 ORTHO05D000042 6.1e-11 71.2 108 37.0
Lj6C197T3 Lonicera japonica HOM05D000092 ORTHO05D000042 7.9e-11 70.9 126 36.5
Lj6C226T7 Lonicera japonica HOM05D000092 ORTHO05D011915 7.9e-11 70.9 118 35.6
Lj4A323T38 Lonicera japonica HOM05D000092 ORTHO05D000042 1.0e-10 70.5 108 35.2
CSS0004067 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 1.4e-10 70.1 116 31.9
Rhsim02G0093800 Rhododendron simsii HOM05D000092 ORTHO05D000042 1.8e-10 69.7 108 36.1
Oeu009133.1 Olea europaea HOM05D000092 ORTHO05D000042 3.0e-10 68.9 116 31.9
Prupe.2G025200 Prunus persica HOM05D000092 ORTHO05D000042 3.0e-10 68.9 110 36.4
Dinv05715 Davidia involucrata HOM05D000092 ORTHO05D000042 3.9e-10 68.6 116 34.5
Lj5C541T0 Lonicera japonica HOM05D000092 ORTHO05D000042 3.9e-10 68.6 113 34.5
vmacro07639 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 3.9e-10 68.6 96 38.5
CSS0033810 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 5.1e-10 68.2 116 32.8
Lj3C572T0 Lonicera japonica HOM05D000092 ORTHO05D000042 5.1e-10 68.2 109 30.3
Dinv02871 Davidia involucrata HOM05D000092 ORTHO05D000042 6.7e-10 67.8 107 37.4
QL07p010483 Quercus lobata HOM05D000092 ORTHO05D000042 6.7e-10 67.8 104 39.4
Solyc12g016220.3 Solanum lycopersicum HOM05D000092 ORTHO05D000042 6.7e-10 67.8 103 35.9
vmacro04667 Vaccinium macrocarpon HOM05D001657 ORTHO05D001557 6.7e-10 67.8 99 36.4
CSS0045612 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 8.8e-10 67.4 116 32.8
Dinv10937 Davidia involucrata HOM05D000092 ORTHO05D000042 8.8e-10 67.4 119 35.3
Prupe.2G025400 Prunus persica HOM05D000092 ORTHO05D000042 8.8e-10 67.4 119 34.5
Prupe.2G027200 Prunus persica HOM05D000092 ORTHO05D000042 8.8e-10 67.4 98 37.8
Dinv10922 Davidia involucrata HOM05D000092 ORTHO05D000042 1.5e-09 66.6 119 35.3
Lj3C13G13 Lonicera japonica HOM05D000092 ORTHO05D000042 2.0e-09 66.2 113 35.4
Lj6C191T2 Lonicera japonica HOM05D000092 ORTHO05D000042 2.0e-09 66.2 119 33.6
Lj6C195G1 Lonicera japonica HOM05D000092 ORTHO05D000042 2.0e-09 66.2 98 37.8
PGSC0003DMG400018903 Solanum tuberosum HOM05D000092 ORTHO05D000042 2.0e-09 66.2 112 32.1
Actinidia32953 Actinidia chinensis HOM05D000092 ORTHO05D002559 2.6e-09 65.9 109 35.8
CSS0029306 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 3.3e-09 65.5 104 34.6
Dinv05714 Davidia involucrata HOM05D000092 ORTHO05D000042 4.4e-09 65.1 116 32.8
Dinv07581 Davidia involucrata HOM05D000092 ORTHO05D000042 4.4e-09 65.1 117 30.8
Dinv10920 Davidia involucrata HOM05D000092 ORTHO05D000042 4.4e-09 65.1 116 34.5
Dinv02211 Davidia involucrata HOM05D000092 ORTHO05D000042 5.7e-09 64.7 110 34.5
Duzib177G0393 Durio zibethinus HOM05D000092 ORTHO05D000042 5.7e-09 64.7 119 34.5
Rhsim03G0040200 Rhododendron simsii HOM05D000092 ORTHO05D000042 5.7e-09 64.7 116 30.2
Rhsim02G0094600 Rhododendron simsii HOM05D000092 ORTHO05D000042 7.4e-09 64.3 108 33.3
CSS0026281 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 9.7e-09 63.9 96 36.5
Lj1C1096T2 Lonicera japonica HOM05D000092 ORTHO05D000042 9.7e-09 63.9 96 37.5
Lj5A808T13 Lonicera japonica HOM05D000092 ORTHO05D000042 9.7e-09 63.9 57 49.1
Lju124A45G66 Lonicera japonica HOM05D000092 ORTHO05D000042 1.3e-08 63.5 108 35.2
Oeu059131.1 Olea europaea HOM05D000092 ORTHO05D000042 1.3e-08 63.5 108 34.3
QL07p019306 Quercus lobata HOM05D000092 ORTHO05D000042 1.3e-08 63.5 98 35.7
vmacro07802 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 1.7e-08 63.2 106 33.0
Lj1C1089T10 Lonicera japonica HOM05D000092 ORTHO05D000042 2.2e-08 62.8 94 39.4
MD11G1086600 Malus domestica HOM05D000092 ORTHO05D000042 2.2e-08 62.8 105 35.2
Oeu026311.1 Olea europaea HOM05D000092 ORTHO05D000042 2.2e-08 62.8 105 35.2
Sed0024189 Sechium edule HOM05D000092 ORTHO05D000042 2.2e-08 62.8 110 28.2
ClCG11G010480 Citrullus lanatus HOM05D000092 ORTHO05D000042 3.7e-08 62.0 122 32.0
Lju124A44G40 Lonicera japonica HOM05D000092 ORTHO05D000042 3.7e-08 62.0 97 36.1
CAN.G1161.9 Capsicum annuum HOM05D000092 ORTHO05D000042 4.8e-08 61.6 98 35.7
CsaV3_2G009890 Cucumis sativus L. HOM05D000092 ORTHO05D000042 4.8e-08 61.6 114 28.9
Lj6C201T1 Lonicera japonica HOM05D000092 ORTHO05D000042 4.8e-08 61.6 118 32.2
MBI18_g20626_MAGBIO Magnolia biondii HOM05D000092 ORTHO05D000042 4.8e-08 61.6 101 34.7
TAR636G0203 Trochodendron aralioides HOM05D000092 ORTHO05D000042 4.8e-08 61.6 109 33.9
GSVIVG01023444001 Vitis vinifera HOM05D000092 ORTHO05D000042 4.8e-08 61.6 111 32.4
Ciclev10014088m.g Citrus clementina HOM05D000092 ORTHO05D000042 6.3e-08 61.2 115 33.0
Prupe.2G029200 Prunus persica HOM05D000092 ORTHO05D000042 6.3e-08 61.2 109 33.0
CAN.G1161.48 Capsicum annuum HOM05D000092 ORTHO05D000042 8.2e-08 60.8 118 31.4
CAN.G1161.58 Capsicum annuum HOM05D000092 ORTHO05D000042 8.2e-08 60.8 118 32.2
MELO3C008693.2 Cucumis melo HOM05D000092 ORTHO05D000042 8.2e-08 60.8 114 28.1
QL07p019170 Quercus lobata HOM05D000254 ORTHO05D000165 8.2e-08 60.8 108 35.2
Ciclev10000123m.g Citrus clementina HOM05D000092 ORTHO05D000042 1.1e-07 60.5 107 34.6
Ciclev10018190m.g Citrus clementina HOM05D000092 ORTHO05D000042 1.1e-07 60.5 115 33.0
Duzib106G0165 Durio zibethinus HOM05D000092 ORTHO05D000042 1.1e-07 60.5 125 36.0
Lj6A185T29 Lonicera japonica HOM05D000092 ORTHO05D000042 1.1e-07 60.5 118 31.4
MBI18_g45949_MAGBIO Magnolia biondii HOM05D000092 ORTHO05D000042 1.1e-07 60.5 118 33.1
MD15G1398500 Malus domestica HOM05D000092 ORTHO05D000042 1.1e-07 60.5 101 34.7
QL07p010874 Quercus lobata HOM05D000092 ORTHO05D000042 1.1e-07 60.5 106 35.8
MD11G1090100 Malus domestica HOM05D000092 ORTHO05D000042 1.4e-07 60.1 73 39.7
QL07p019211 Quercus lobata HOM05D000092 ORTHO05D000042 1.4e-07 60.1 101 33.7
PGSC0003DMG400002820 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.4e-07 60.1 114 28.9
TAR636G3578 Trochodendron aralioides HOM05D000092 ORTHO05D000042 1.4e-07 60.1 110 33.6
CAN.G1161.51 Capsicum annuum HOM05D000092 ORTHO05D000042 1.8e-07 59.7 118 32.2
Lj6C190T0 Lonicera japonica HOM05D000092 ORTHO05D000042 1.8e-07 59.7 98 35.7
MBI18_g45951_MAGBIO Magnolia biondii HOM05D000092 ORTHO05D000042 1.8e-07 59.7 106 33.0
Prupe.2G029300 Prunus persica HOM05D000092 ORTHO05D000042 1.8e-07 59.7 114 30.7
Solyc02g036270.4 Solanum lycopersicum HOM05D000092 ORTHO05D000042 1.8e-07 59.7 102 35.3
PGSC0003DMG401016933 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.8e-07 59.7 100 34.0
MD11G1087300 Malus domestica HOM05D000092 ORTHO05D000042 2.4e-07 59.3 102 34.3
Lju124C45T0 Lonicera japonica HOM05D000092 ORTHO05D000042 3.1e-07 58.9 117 35.0
MD11G1089600 Malus domestica HOM05D000092 ORTHO05D000042 4.1e-07 58.5 102 34.3
Cc00_g10380 Coffea canephora HOM05D000092 ORTHO05D000042 5.3e-07 58.2 106 30.2
Lj6C219T1 Lonicera japonica HOM05D000092 ORTHO05D000042 5.3e-07 58.2 118 31.4
Peaxi162Scf00003g04724 Petunia axillaris HOM05D000092 ORTHO05D000042 5.3e-07 58.2 103 32.0
QL07p019286 Quercus lobata HOM05D000092 ORTHO05D000042 5.3e-07 58.2 111 29.7
PGSC0003DMG400010886 Solanum tuberosum HOM05D000092 ORTHO05D000042 5.3e-07 58.2 103 30.1
Duzib177G0930 Durio zibethinus HOM05D000092 ORTHO05D000042 7.0e-07 57.8 119 32.8
Lj1C1131T0 Lonicera japonica HOM05D000092 ORTHO05D000042 7.0e-07 57.8 116 31.9
PGSC0003DMG401007575 Solanum tuberosum HOM05D000092 ORTHO05D000042 7.0e-07 57.8 108 29.6
Ciclev10010265m.g Citrus clementina HOM05D000092 ORTHO05D000042 9.1e-07 57.4 107 29.0
DCAR_004567 Daucus carota HOM05D000092 ORTHO05D000042 9.1e-07 57.4 93 28.0
Duzib177G0743 Durio zibethinus HOM05D000092 ORTHO05D000042 9.1e-07 57.4 125 37.6
Duzib192G0297 Durio zibethinus HOM05D000092 ORTHO05D000042 9.1e-07 57.4 120 27.5
MD03G1081300 Malus domestica HOM05D000092 ORTHO05D000042 9.1e-07 57.4 102 33.3
Oeu015351.2 Olea europaea HOM05D000092 ORTHO05D000042 9.1e-07 57.4 98 30.6
Rhsim04G0114200 Rhododendron simsii HOM05D000092 ORTHO05D000042 9.1e-07 57.4 109 31.2
CSS0042836 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 1.2e-06 57.0 116 29.3
Duzib177G0993 Durio zibethinus HOM05D000092 ORTHO05D000042 1.2e-06 57.0 119 32.8
Lj6C224G2 Lonicera japonica HOM05D000092 ORTHO05D011915 1.2e-06 57.0 74 37.8
Manes.07G061000 Manihot esculenta HOM05D000092 ORTHO05D000042 1.2e-06 57.0 118 30.5
vmacro09389 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 1.2e-06 57.0 98 35.7
VMungo0464G1116 Vigna mungo HOM05D000092 ORTHO05D000042 1.2e-06 57.0 106 35.8
MSTRG.26843 Avicennia marina HOM05D000092 ORTHO05D000042 1.5e-06 56.6 32 87.5
CAN.G960.2 Capsicum annuum HOM05D000092 ORTHO05D000042 1.5e-06 56.6 98 33.7
Dinv07585 Davidia involucrata HOM05D000092 ORTHO05D000042 1.5e-06 56.6 108 29.6
Lj1A1130G57 Lonicera japonica HOM05D000092 ORTHO05D000042 1.5e-06 56.6 106 32.1
Lju124C46T9 Lonicera japonica HOM05D000092 ORTHO05D000042 1.5e-06 56.6 116 31.0
MBI18_g20624_MAGBIO Magnolia biondii HOM05D000092 ORTHO05D000042 1.5e-06 56.6 118 32.2
QL07p010511 Quercus lobata HOM05D000092 ORTHO05D000042 1.5e-06 56.6 101 35.6
QL07p010572 Quercus lobata HOM05D000092 ORTHO05D000042 1.5e-06 56.6 101 35.6
Sopen02g011670 Solanum pennellii HOM05D000092 ORTHO05D000042 1.5e-06 56.6 102 34.3
Ciclev10007422m.g Citrus clementina HOM05D000092 ORTHO05D000042 2.0e-06 56.2 117 30.8
Ciclev10014275m.g Citrus clementina HOM05D000092 ORTHO05D000042 2.0e-06 56.2 108 33.3
Cc06_g19660 Coffea canephora HOM05D000092 ORTHO05D000042 2.0e-06 56.2 107 29.9
Duzib177G0617 Durio zibethinus HOM05D000092 ORTHO05D000042 2.0e-06 56.2 123 37.4
Rhsim04G0114400 Rhododendron simsii HOM05D000092 ORTHO05D000042 2.0e-06 56.2 112 33.0
Actinidia38183 Actinidia chinensis HOM05D000092 ORTHO05D000042 2.6e-06 55.8 121 28.9
Ciclev10017820m.g Citrus clementina HOM05D000092 ORTHO05D000042 2.6e-06 55.8 116 31.9
Lj1C1085T1 Lonicera japonica HOM05D000092 ORTHO05D000042 2.6e-06 55.8 118 31.4
Lj6P229T19 Lonicera japonica HOM05D000092 ORTHO05D016306 2.6e-06 55.8 98 35.7
CAN.G641.10 Capsicum annuum HOM05D000092 ORTHO05D000042 3.4e-06 55.5 114 28.1
vmacro07804 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 3.4e-06 55.5 96 30.2
FvH4_2g36800 Fragaria vesca HOM05D000092 ORTHO05D000042 4.5e-06 55.1 109 30.3
FAN05G4643 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.5e-06 55.1 112 31.2
FAN15G1645 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.5e-06 55.1 103 34.0
Manes.02G200600 Manihot esculenta HOM05D000092 ORTHO05D000042 4.5e-06 55.1 104 33.7
Oeu016047.1 Olea europaea HOM05D000092 ORTHO05D000042 4.5e-06 55.1 93 34.4
Oeu063788.1 Olea europaea HOM05D000092 ORTHO05D000042 4.5e-06 55.1 96 30.2
QL07p010547 Quercus lobata HOM05D000092 ORTHO05D000042 4.5e-06 55.1 101 34.7
CANSAT11G0523 Cannabis sativa HOM05D000092 ORTHO05D000042 5.9e-06 54.7 99 32.3
Ciclev10003660m.g Citrus clementina HOM05D000092 ORTHO05D000042 5.9e-06 54.7 98 33.7
Duzib106G0568 Durio zibethinus HOM05D000092 ORTHO05D000042 5.9e-06 54.7 123 32.5
Potri.001G434000 Populus trichocarpa HOM05D000092 ORTHO05D000042 5.9e-06 54.7 89 30.3
Actinidia38187 Actinidia chinensis HOM05D000092 ORTHO05D000042 7.7e-06 54.3 121 28.9
Cc00_g15430 Coffea canephora HOM05D000092 ORTHO05D000042 7.7e-06 54.3 103 32.0
Cc00_g22090 Coffea canephora HOM05D000092 ORTHO05D000042 7.7e-06 54.3 103 32.0
Cc00_g32210 Coffea canephora HOM05D000092 ORTHO05D000042 7.7e-06 54.3 76 34.2
Eucgr.G00518 Eucalyptus grandis HOM05D000092 ORTHO05D000042 7.7e-06 54.3 110 30.9
Lj1C1095G2 Lonicera japonica HOM05D000092 ORTHO05D000042 7.7e-06 54.3 112 30.4
Lju124C47T3 Lonicera japonica HOM05D000092 ORTHO05D011915 7.7e-06 54.3 115 31.3
Peaxi162Scf00003g04738 Petunia axillaris HOM05D000092 ORTHO05D000042 7.7e-06 54.3 100 33.0
Potri.001G426660 Populus trichocarpa HOM05D000092 ORTHO05D000042 7.7e-06 54.3 88 33.0
Sed0014220 Sechium edule HOM05D000092 ORTHO05D000042 7.7e-06 54.3 107 31.8


User provided reference genes

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