Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 0.0e+00 1229.5 638 100.0
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 3.8e-298 1027.7 641 83.2
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 1.6e-296 1022.3 641 82.8
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 2.7e-288 995.0 631 81.8
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 3.7e-285 984.6 644 80.6
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 6.9e-276 953.7 647 78.7
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 9.1e-276 953.4 642 78.3
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 7.2e-273 943.7 647 77.7
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 8.8e-271 936.8 645 77.7
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 1.5e-270 936.0 645 77.5
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 2.0e-270 935.6 650 76.5
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 2.6e-270 935.3 645 77.5
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.5e-267 924.5 636 78.1
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.7e-266 922.5 636 78.1
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 1.1e-260 903.3 639 74.5
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 3.1e-260 901.7 642 73.8
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 5.0e-258 894.4 633 75.2
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 8.8e-255 883.6 639 73.6
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 4.4e-254 881.3 640 73.6
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.2e-253 879.0 639 72.9
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 9.1e-252 873.6 643 71.4
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 4.5e-251 871.3 640 73.1
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 5.0e-250 867.8 632 72.6
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 2.1e-248 862.4 646 69.7
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 2.8e-248 862.1 649 70.3
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 2.8e-248 862.1 637 71.3
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 4.7e-248 861.3 645 70.7
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 8.0e-248 860.5 649 69.6
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 1.8e-247 859.4 648 70.4
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 5.2e-247 857.8 649 70.4
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 5.2e-247 857.8 644 70.0
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 1.2e-246 856.7 646 71.7
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 1.2e-246 856.7 655 69.9
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 3.4e-246 855.1 650 69.4
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 6.3e-245 850.9 650 69.2
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 8.3e-245 850.5 657 70.0
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 3.1e-244 848.6 659 68.7
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 9.2e-244 847.0 643 68.7
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 9.2e-244 847.0 643 68.7
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 1.6e-243 846.3 645 69.5
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 2.7e-243 845.5 649 68.7
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 7.8e-243 844.0 644 68.6
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 1.3e-242 843.2 649 69.2
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.3e-242 842.4 632 71.2
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 3.8e-242 841.6 648 68.8
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 3.8e-242 841.6 641 69.0
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 5.0e-242 841.3 646 68.9
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 8.6e-242 840.5 648 68.7
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 1.5e-241 839.7 639 68.1
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.9e-241 839.3 600 73.7
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.9e-241 839.3 642 70.4
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 2.5e-241 839.0 646 69.0
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 7.3e-241 837.4 659 68.1
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 9.5e-241 837.0 648 69.0
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.2e-240 836.6 648 69.1
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 2.1e-240 835.9 644 68.0
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 2.8e-240 835.5 650 68.2
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 8.0e-240 833.9 649 68.4
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 1.8e-239 832.8 648 67.6
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 2.3e-239 832.4 640 67.7
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 4.0e-239 831.6 648 67.6
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 5.2e-239 831.2 644 68.0
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 2.6e-238 828.9 642 67.8
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 9.8e-238 827.0 650 67.8
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 6.4e-237 824.3 649 67.5
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 8.3e-237 823.9 645 68.1
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 1.4e-236 823.2 640 67.5
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 1.8e-236 822.8 647 68.0
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 2.4e-236 822.4 652 66.9
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 7.0e-236 820.8 643 66.9
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 7.0e-236 820.8 640 67.7
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 9.2e-236 820.5 654 67.0
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 1.2e-235 820.1 651 66.8
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 2.7e-235 818.9 655 66.4
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 4.6e-235 818.1 652 66.7
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 4.6e-235 818.1 652 67.2
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 1.0e-234 817.0 630 69.7
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.7e-234 816.2 629 69.2
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 2.3e-234 815.8 661 65.8
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 5.0e-234 814.7 652 66.4
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 5.0e-234 814.7 653 66.5
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 5.0e-234 814.7 654 66.4
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 5.0e-234 814.7 656 66.5
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 6.6e-234 814.3 658 66.4
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 8.6e-234 813.9 652 66.4
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.5e-233 812.4 644 67.1
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 5.6e-233 811.2 649 66.7
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 7.3e-233 810.8 655 66.0
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 1.2e-232 810.1 652 66.6
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 2.8e-232 808.9 657 65.6
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 4.7e-232 808.1 646 66.4
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 4.7e-232 808.1 652 66.1
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 3.1e-231 805.4 626 68.2
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 4.0e-231 805.1 634 68.6
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 8.9e-231 803.9 648 66.5
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 7.5e-230 800.8 629 66.6
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 9.8e-230 800.4 653 65.1
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 8.3e-229 797.3 624 69.2
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 5.4e-228 794.7 641 67.2
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 2.8e-224 782.3 655 64.6
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 2.8e-224 782.3 650 64.6
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 1.4e-220 770.0 581 69.2
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-217 760.4 652 62.9
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.3e-217 758.8 644 63.2
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.6e-216 756.5 645 64.3
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.6e-216 756.5 648 62.7
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.1e-216 756.1 645 64.0
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 3.3e-209 732.3 639 61.2
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 8.4e-205 717.6 625 64.6
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 7.3e-201 704.5 644 62.7
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 2.0e-198 696.4 647 60.0
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 8.4e-197 691.0 539 70.7
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 5.3e-191 671.8 632 60.3
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 2.2e-189 666.4 648 57.3
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 2.9e-189 666.0 646 58.4
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 7.1e-188 661.4 634 59.6
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 2.7e-187 659.4 646 57.3
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.1e-167 594.3 621 55.9
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.6e-161 573.2 541 60.4
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 8.5e-157 558.1 647 51.2
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 7.5e-145 518.5 666 47.1
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 1.4e-143 514.2 631 51.0
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 3.8e-141 506.1 674 44.5
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 1.8e-138 497.3 320 81.2
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 5.8e-121 439.1 669 41.6
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 4.1e-111 406.4 351 63.5
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 7.8e-102 375.6 243 77.4
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 5.8e-89 332.8 404 48.8
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 2.2e-64 251.1 328 48.5
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 1.4e-42 178.7 564 29.3
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.0e-40 172.6 114 80.7
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.5e-33 147.5 109 68.8
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 7.5e-28 129.8 95 73.7
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.4e-21 109.0 113 56.6
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 4.9e-11 73.9 105 43.8
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 5.4e-10 70.5 44 77.3
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 6.6e-08 63.5 46 65.2


User provided reference genes

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