Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 3.3e-192 674.9 336 100.0
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 1.2e-138 496.9 341 73.9
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 3.3e-136 488.8 338 72.5
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 5.7e-128 461.5 344 68.9
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 2.0e-125 453.0 344 66.0
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 4.7e-122 441.8 336 66.4
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 3.3e-120 435.6 290 69.7
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 3.3e-120 435.6 318 69.2
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 9.7e-120 434.1 337 64.4
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 3.7e-119 432.2 344 63.1
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 2.4e-118 429.5 360 61.7
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 1.6e-117 426.8 340 64.1
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 2.0e-117 426.4 348 61.5
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 1.3e-116 423.7 349 60.5
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 2.2e-116 422.9 345 63.8
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 6.5e-116 421.4 341 63.3
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 3.2e-115 419.1 355 61.1
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 4.2e-115 418.7 354 62.7
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 2.7e-114 416.0 349 60.2
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 8.0e-114 414.5 308 63.0
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 1.0e-113 414.1 326 63.8
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 2.3e-113 412.9 344 61.3
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 4.0e-113 412.1 308 63.0
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 6.8e-113 411.4 336 62.5
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 8.8e-113 411.0 336 61.6
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 1.2e-112 410.6 352 60.5
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.5e-112 410.2 316 64.6
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 2.6e-112 409.5 317 64.4
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 5.7e-112 408.3 327 59.9
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.3e-111 407.1 305 63.0
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 2.2e-111 406.4 304 64.1
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 2.8e-111 406.0 338 63.3
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 4.8e-111 405.2 344 59.6
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 4.8e-111 405.2 305 63.0
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 6.3e-111 404.8 289 68.9
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 1.1e-110 404.1 338 58.6
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 1.1e-110 404.1 335 61.5
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 1.4e-110 403.7 347 60.5
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 2.4e-110 402.9 337 58.8
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 3.1e-110 402.5 337 58.2
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 3.1e-110 402.5 337 58.2
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 4.1e-110 402.1 292 67.8
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 5.4e-110 401.7 338 58.6
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 9.1e-110 401.0 308 63.3
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 1.2e-109 400.6 354 59.9
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 1.2e-109 400.6 286 68.2
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 1.6e-109 400.2 308 62.7
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 2.0e-109 399.8 343 60.1
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 2.7e-109 399.4 340 58.8
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 3.5e-109 399.1 295 65.4
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 4.5e-109 398.7 292 67.5
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 5.9e-109 398.3 296 64.2
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 5.9e-109 398.3 289 67.1
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 7.7e-109 397.9 338 60.7
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 1.0e-108 397.5 331 60.1
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 1.3e-108 397.1 349 59.0
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 2.9e-108 396.0 308 62.0
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 1.1e-107 394.0 336 59.2
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 1.5e-107 393.7 283 68.2
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 2.5e-107 392.9 334 59.6
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 5.5e-107 391.7 362 58.3
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 5.5e-107 391.7 286 65.0
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 1.2e-106 390.6 328 58.5
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 1.6e-106 390.2 281 66.5
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 1.6e-106 390.2 299 63.2
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 2.1e-106 389.8 308 63.0
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 3.6e-106 389.0 320 61.6
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 3.6e-106 389.0 307 62.2
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 4.7e-106 388.7 320 60.9
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 6.1e-106 388.3 369 55.8
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 2.3e-105 386.3 354 55.4
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 3.0e-105 386.0 322 60.2
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 3.0e-105 386.0 322 60.2
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 5.2e-105 385.2 353 56.9
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 6.8e-105 384.8 354 55.4
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 1.5e-104 383.6 347 55.9
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 9.8e-104 380.9 325 59.1
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 9.8e-104 380.9 286 62.9
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 1.7e-103 380.2 302 61.3
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 6.3e-103 378.3 315 61.9
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 8.3e-103 377.9 344 58.4
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 3.1e-102 375.9 345 57.1
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 1.2e-101 374.0 319 58.3
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 1.2e-101 374.0 328 58.5
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.6e-101 373.6 334 58.4
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.3e-100 370.5 320 57.5
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 6.6e-100 368.2 281 62.3
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 1.1e-99 367.5 290 62.1
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 7.3e-99 364.8 321 57.6
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 2.1e-98 363.2 352 54.5
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 1.4e-97 360.5 335 55.8
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 3.1e-97 359.4 338 57.1
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 5.8e-96 355.1 243 70.4
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 7.5e-96 354.8 252 65.5
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 1.7e-95 353.6 286 59.1
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 2.2e-95 353.2 341 56.6
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 2.0e-93 346.7 351 53.8
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 5.0e-92 342.0 243 66.3
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.9e-91 340.1 253 64.0
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 9.5e-91 337.8 258 65.5
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 3.2e-86 322.8 256 60.5
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 6.0e-85 318.5 225 68.4
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 4.3e-83 312.4 294 54.4
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 1.6e-82 310.5 254 60.6
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 1.5e-80 303.9 400 43.5
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 4.1e-78 295.8 222 65.3
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 7.1e-78 295.0 219 65.8
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 2.6e-72 276.6 302 48.3
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 3.8e-71 272.7 198 68.7
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 3.8e-71 272.7 211 64.9
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 1.3e-66 257.7 342 41.5
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.4e-62 243.4 180 67.2
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 2.1e-61 240.4 283 41.7
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 2.4e-57 226.9 306 43.8
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 3.1e-57 226.5 329 38.3
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.1e-54 218.0 306 40.2
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 6.2e-50 202.2 244 41.4
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.4e-49 201.1 302 38.1
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 1.2e-48 198.0 253 43.1
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 2.6e-48 196.8 160 58.8
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 1.7e-47 194.1 175 56.0
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 1.0e-44 184.9 383 33.4
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 1.3e-44 184.5 260 36.9
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 9.6e-43 178.3 255 37.3
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 2.4e-41 173.7 130 60.0
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.1e-37 160.6 158 53.2
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 3.0e-36 156.8 92 71.7
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 1.1e-35 154.8 306 30.7
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.3e-34 151.4 125 60.0
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 1.2e-32 144.8 238 34.5
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 2.5e-30 137.1 114 57.9
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 3.2e-30 136.7 132 53.0
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 8.5e-23 112.1 335 27.2
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 3.7e-18 96.7 216 31.9
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 4.2e-14 83.2 230 28.3
Cfa024306 Carpinus fangiana HOM05D005585 ORTHO05D006905 9.4e-14 82.0 238 25.6
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 7.7e-08 62.4 72 50.0


User provided reference genes

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