Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 2.1e-65 252.3 132 100.0
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 4.6e-33 144.8 124 66.9
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 1.0e-27 127.1 124 62.1
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 2.6e-23 112.5 121 52.9
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.6e-23 112.5 127 54.3
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.7e-22 109.8 124 55.6
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 6.3e-22 107.8 129 52.7
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.1e-21 107.1 122 51.6
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.4e-21 106.7 129 51.9
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 5.9e-20 101.3 65 75.4
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.3e-19 100.1 71 70.4
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 2.9e-19 99.0 78 64.1
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.1e-18 97.1 76 64.5
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.1e-18 97.1 76 64.5
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.1e-18 97.1 76 64.5
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.4e-18 96.7 67 70.1
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.4e-18 96.7 78 65.4
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 4.2e-18 95.1 66 69.7
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.5e-18 94.7 72 65.3
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 5.5e-18 94.7 68 66.2
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 5.5e-18 94.7 75 62.7
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 9.4e-18 94.0 81 61.7
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.2e-17 93.6 67 67.2
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 2.1e-17 92.8 74 66.2
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 2.7e-17 92.4 71 63.4
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.6e-17 92.0 72 61.1
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.7e-17 91.7 66 65.2
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 4.7e-17 91.7 100 52.0
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 6.1e-17 91.3 66 65.2
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 6.1e-17 91.3 66 65.2
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 6.1e-17 91.3 79 58.2
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 1.0e-16 90.5 71 59.2
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 1.0e-16 90.5 87 56.3
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.8e-16 89.7 70 64.3
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 3.0e-16 89.0 106 50.0
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 3.0e-16 89.0 106 50.0
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 5.2e-16 88.2 71 59.2
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.8e-16 87.4 72 61.1
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.8e-16 87.4 72 61.1
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-15 86.7 84 54.8
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-15 86.7 84 54.8
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-15 86.7 84 54.8
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.0e-15 86.3 84 54.8
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 4.4e-15 85.1 69 59.4
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 5.7e-15 84.7 67 61.2
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 5.7e-15 84.7 76 59.2
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 7.4e-15 84.3 78 56.4
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 9.7e-15 84.0 71 60.6
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 9.7e-15 84.0 70 58.6
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 9.7e-15 84.0 72 58.3
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.3e-14 83.6 71 62.0
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.3e-14 83.6 68 57.4
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 1.7e-14 83.2 67 61.2
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 1.7e-14 83.2 67 61.2
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.7e-14 82.0 72 58.3
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 3.7e-14 82.0 69 59.4
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 4.8e-14 81.6 69 56.5
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 4.8e-14 81.6 70 57.1
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.1e-13 80.5 69 58.0
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 1.4e-13 80.1 70 55.7
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.4e-13 80.1 61 59.0
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 1.4e-13 80.1 72 56.9
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 2.4e-13 79.3 72 56.9
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 2.4e-13 79.3 70 52.9
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 2.4e-13 79.3 69 56.5
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.4e-13 79.3 71 53.5
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 3.1e-13 79.0 72 55.6
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 5.3e-13 78.2 72 55.6
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 7.0e-13 77.8 72 52.8
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 9.1e-13 77.4 72 51.4
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 9.1e-13 77.4 70 52.9
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.2e-12 77.0 72 55.6
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.2e-12 77.0 72 51.4
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.6e-12 76.6 62 62.9
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 2.0e-12 76.3 72 54.2
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 2.0e-12 76.3 91 46.2
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 3.5e-12 75.5 72 50.0
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 4.5e-12 75.1 61 62.3
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 4.5e-12 75.1 71 54.9
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 4.5e-12 75.1 73 54.8
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 5.9e-12 74.7 72 52.8
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 5.9e-12 74.7 72 52.8
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 5.9e-12 74.7 72 52.8
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 5.9e-12 74.7 72 52.8
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 5.9e-12 74.7 71 50.7
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 7.7e-12 74.3 72 51.4
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 7.7e-12 74.3 72 51.4
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 7.7e-12 74.3 72 52.8
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.0e-11 73.9 72 51.4
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.0e-11 73.9 72 52.8
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.0e-11 73.9 72 50.0
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.0e-11 73.9 67 59.7
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 1.3e-11 73.6 72 51.4
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.3e-11 73.6 72 50.0
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.3e-11 73.6 62 56.5
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-11 73.2 74 50.0
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 1.7e-11 73.2 72 51.4
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 1.7e-11 73.2 72 51.4
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.7e-11 73.2 72 52.8
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.7e-11 73.2 72 54.2
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.7e-11 73.2 89 42.7
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 2.2e-11 72.8 73 54.8
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.2e-11 72.8 64 56.2
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 2.2e-11 72.8 79 51.9
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.2e-11 72.8 70 52.9
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 2.9e-11 72.4 132 43.9
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 2.9e-11 72.4 64 56.2
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.9e-11 72.4 72 51.4
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 2.9e-11 72.4 72 51.4
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 2.9e-11 72.4 72 50.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 2.9e-11 72.4 74 51.4
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 3.8e-11 72.0 72 51.4
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 3.8e-11 72.0 72 51.4
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 5.0e-11 71.6 64 53.1
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 5.0e-11 71.6 62 56.5
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 5.0e-11 71.6 72 50.0
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 5.0e-11 71.6 72 50.0
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 5.0e-11 71.6 72 50.0
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 5.0e-11 71.6 72 50.0
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 6.5e-11 71.2 72 50.0
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.5e-11 71.2 71 50.7
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 6.5e-11 71.2 74 48.6
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 8.5e-11 70.9 62 56.5
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 8.5e-11 70.9 62 56.5
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 8.5e-11 70.9 72 52.8
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-10 70.5 70 54.3
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.5e-10 70.1 72 50.0
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.5e-10 70.1 78 48.7
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.5e-10 69.3 70 52.9
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 2.5e-10 69.3 70 55.7
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.5e-10 69.3 70 52.9
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 2.5e-10 69.3 70 55.7
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.5e-10 69.3 70 52.9
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 2.5e-10 69.3 70 55.7
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.5e-10 69.3 70 54.3
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 2.5e-10 69.3 70 48.6
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.5e-10 69.3 72 48.6
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 3.2e-10 68.9 70 54.3
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 3.2e-10 68.9 70 54.3
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 3.2e-10 68.9 72 50.0
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 3.2e-10 68.9 72 48.6
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 5.5e-10 68.2 70 52.9
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 5.5e-10 68.2 70 54.3
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 5.5e-10 68.2 70 52.9
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 5.5e-10 68.2 70 52.9
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 5.5e-10 68.2 70 54.3
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 5.5e-10 68.2 70 48.6
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 5.5e-10 68.2 77 46.8
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 7.2e-10 67.8 72 55.6
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 7.2e-10 67.8 70 48.6
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 7.2e-10 67.8 105 42.9
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 9.4e-10 67.4 70 54.3
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 9.4e-10 67.4 70 52.9
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 9.4e-10 67.4 72 47.2
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 9.4e-10 67.4 61 54.1
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 1.2e-09 67.0 70 51.4
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 1.2e-09 67.0 70 51.4
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.2e-09 67.0 87 46.0
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.2e-09 67.0 70 52.9
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.6e-09 66.6 70 48.6
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.6e-09 66.6 109 40.4
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 1.6e-09 66.6 72 45.8
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.1e-09 66.2 70 51.4
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.1e-09 66.2 71 47.9
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 2.1e-09 66.2 61 54.1
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 2.1e-09 66.2 61 54.1
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 2.7e-09 65.9 82 41.5
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 4.7e-09 65.1 72 47.2
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 4.7e-09 65.1 70 51.4
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 4.7e-09 65.1 70 50.0
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 4.7e-09 65.1 69 44.9
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 4.7e-09 65.1 72 45.8
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 6.1e-09 64.7 67 49.3
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 4.0e-08 62.0 66 47.0
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 4.0e-08 62.0 69 47.8
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 8.8e-08 60.8 47 63.8
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 4.4e-07 58.5 47 61.7
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.4e-07 58.5 47 59.6
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 4.4e-07 58.5 57 54.4
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 1.3e-06 57.0 68 45.6


User provided reference genes

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