Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.0e-107 392.5 202 100.0
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.8e-81 306.2 179 84.9
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.2e-77 293.5 189 79.4
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 6.1e-77 291.2 182 81.9
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 2.6e-75 285.8 179 80.4
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.2e-74 282.7 183 76.0
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.7e-74 282.0 176 81.2
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 8.3e-74 280.8 182 75.8
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 2.4e-73 279.3 177 80.2
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 7.0e-73 277.7 183 78.1
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.2e-72 276.9 178 79.8
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.2e-72 276.9 182 78.6
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 1.2e-72 276.9 171 80.7
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.3e-71 273.5 177 78.5
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.3e-71 273.5 182 76.4
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 2.3e-71 272.7 200 72.0
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 5.0e-71 271.6 177 78.0
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.1e-70 270.4 178 76.4
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.5e-70 270.0 177 78.0
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 5.6e-70 268.1 178 76.4
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 9.5e-70 267.3 175 77.7
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 2.1e-69 266.2 176 76.7
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.0e-68 263.8 170 74.7
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.8e-68 263.1 182 74.2
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.8e-68 263.1 173 78.0
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 4.0e-68 261.9 183 75.4
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 5.2e-68 261.5 189 72.0
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 5.2e-68 261.5 173 77.5
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 5.2e-68 261.5 175 76.0
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 6.8e-68 261.2 177 72.9
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 8.9e-68 260.8 179 73.2
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.2e-67 260.4 183 72.7
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.6e-67 259.2 176 75.0
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.6e-67 259.2 178 72.5
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 5.8e-67 258.1 174 75.9
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.7e-66 256.5 170 75.9
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 2.2e-66 256.1 173 75.7
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 2.2e-66 256.1 176 75.6
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 2.9e-66 255.8 212 65.6
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 3.7e-66 255.4 177 72.3
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 3.7e-66 255.4 167 76.6
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 4.9e-66 255.0 183 69.9
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.4e-66 254.6 175 74.3
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 8.3e-66 254.2 182 71.4
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.1e-65 253.8 161 80.7
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.9e-65 253.1 173 74.0
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 3.2e-65 252.3 170 72.9
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 4.1e-65 251.9 173 73.4
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 5.4e-65 251.5 175 73.1
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 7.0e-65 251.1 183 72.1
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 2.7e-64 249.2 183 73.8
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 4.6e-64 248.4 194 69.1
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 6.0e-64 248.1 172 74.4
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 6.0e-64 248.1 178 68.5
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 7.8e-64 247.7 178 68.5
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 8.6e-63 244.2 167 75.4
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-62 243.8 175 71.4
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.1e-62 243.8 189 66.7
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.3e-62 241.9 168 74.4
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 9.5e-62 240.7 177 66.1
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.6e-61 240.0 171 70.2
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.7e-61 238.4 178 69.7
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 6.2e-61 238.0 176 66.5
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.1e-60 237.3 144 83.3
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.4e-60 236.9 178 69.1
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.3e-60 236.1 166 73.5
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 3.1e-60 235.7 242 55.4
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.8e-60 234.6 178 69.1
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.9e-60 234.2 176 69.3
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.6e-59 232.6 178 68.0
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 1.9e-57 226.5 182 65.9
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.2e-56 223.8 166 68.7
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.6e-56 223.4 171 68.4
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.7e-56 222.6 170 71.2
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 6.0e-56 221.5 170 69.4
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.3e-55 220.3 181 66.9
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.3e-55 220.3 136 80.9
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 5.1e-55 218.4 140 81.4
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.3e-52 209.5 137 78.1
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.3e-52 209.5 170 60.6
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-51 207.2 167 65.9
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 4.4e-51 205.3 135 75.6
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.9e-50 202.6 200 59.0
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.7e-50 202.2 170 58.2
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 6.4e-50 201.4 120 84.2
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 7.1e-49 198.0 173 57.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 1.6e-48 196.8 180 55.0
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.6e-48 196.8 171 57.3
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.6e-48 196.8 145 69.0
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.7e-48 196.1 182 56.0
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 2.7e-48 196.1 171 57.3
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 6.0e-48 194.9 180 55.6
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 3.3e-46 189.1 178 55.1
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 4.3e-46 188.7 170 55.9
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 5.6e-46 188.3 180 54.4
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 5.6e-46 188.3 183 53.6
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 9.6e-46 187.6 197 52.3
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 8.1e-45 184.5 159 56.6
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.4e-44 183.7 184 53.3
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 6.8e-44 181.4 142 66.2
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.5e-43 180.3 113 78.8
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 4.4e-43 178.7 184 52.2
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 5.8e-43 178.3 180 52.8
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.9e-41 173.3 122 71.3
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.4e-41 172.9 133 66.9
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 3.2e-41 172.6 170 51.8
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 3.2e-41 172.6 170 51.8
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 5.4e-41 171.8 176 52.3
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 7.1e-41 171.4 171 51.5
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.6e-40 170.2 133 68.4
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.7e-40 169.5 176 51.7
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.3e-39 166.4 118 73.7
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.8e-36 156.8 138 59.4
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 3.4e-35 152.5 118 66.1
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 7.6e-35 151.4 156 55.8
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 6.4e-34 148.3 148 52.7
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.2e-33 146.0 119 63.9
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 9.3e-33 144.4 126 62.7
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.2e-32 144.1 185 42.7
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.6e-32 143.7 118 61.0
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 4.6e-32 142.1 177 45.2
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 6.0e-32 141.7 174 43.7
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 6.6e-31 138.3 177 42.4
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 4.8e-29 132.1 171 43.9
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 6.2e-29 131.7 171 43.9
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 8.1e-29 131.3 187 42.2
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 8.1e-29 131.3 171 43.9
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.4e-28 130.6 139 49.6
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.4e-28 130.6 172 44.2
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.4e-28 129.8 83 78.3
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.5e-27 127.1 183 40.4
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.7e-26 123.6 177 39.0
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 3.8e-26 122.5 168 41.1
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.0e-23 114.4 131 52.7
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.8e-20 103.6 57 91.2
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.2e-19 100.9 57 87.7
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.5e-19 100.5 165 35.2
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 2.9e-18 96.3 169 36.7
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.9e-18 96.3 57 84.2
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-17 94.4 130 43.1
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.4e-17 94.0 57 82.5
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 1.2e-16 90.9 89 56.2
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 7.9e-16 88.2 63 69.8
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.9e-14 83.6 57 73.7
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.8e-12 77.0 73 56.2
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 5.3e-12 75.5 83 49.4
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 5.3e-12 75.5 166 33.1
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.5e-11 73.9 41 87.8
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 1.3e-07 60.8 38 71.1


User provided reference genes

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