Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 2.3e-176 622.1 310 100.0
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 4.3e-114 415.2 267 77.5
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 2.3e-107 392.9 308 67.9
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 4.8e-105 385.2 298 66.8
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 6.9e-96 354.8 355 57.7
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 1.5e-95 353.6 219 77.6
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 2.9e-94 349.4 307 62.5
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 2.1e-92 343.2 265 64.9
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 2.1e-92 343.2 293 64.8
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 4.7e-92 342.0 279 61.6
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 1.8e-91 340.1 300 62.3
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 3.0e-91 339.3 303 59.7
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 2.0e-90 336.7 299 61.5
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 9.7e-90 334.3 307 60.6
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 1.8e-88 330.1 295 60.3
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 1.2e-87 327.4 276 61.6
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 2.6e-87 326.2 294 60.2
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 3.8e-86 322.4 285 58.9
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 1.4e-85 320.5 289 59.2
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 1.4e-85 320.5 251 66.1
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 4.2e-85 318.9 301 57.5
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 5.5e-85 318.5 314 54.1
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 7.2e-85 318.2 290 59.0
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.6e-84 317.0 316 53.8
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 4.7e-84 315.5 222 70.3
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 6.1e-84 315.1 310 57.1
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 1.0e-83 314.3 300 60.0
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 1.8e-83 313.5 240 65.8
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 2.3e-83 313.2 265 63.8
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 2.3e-83 313.2 312 58.0
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 2.3e-83 313.2 240 64.6
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 4.4e-82 308.9 294 57.5
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 9.7e-82 307.8 315 55.6
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.8e-81 306.2 306 57.8
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.8e-81 306.2 244 64.8
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 3.7e-81 305.8 224 65.2
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 3.7e-81 305.8 234 63.7
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 3.7e-81 305.8 244 63.9
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 3.7e-81 305.8 304 57.9
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 3.7e-81 305.8 321 54.5
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 4.8e-81 305.4 276 57.2
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 4.8e-81 305.4 248 62.9
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 1.4e-80 303.9 310 53.5
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 1.4e-80 303.9 278 57.6
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 1.8e-80 303.5 306 56.2
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 2.4e-80 303.1 242 62.4
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 2.4e-80 303.1 242 62.4
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 3.1e-80 302.8 265 58.5
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 5.3e-80 302.0 270 60.0
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 5.3e-80 302.0 248 64.1
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 7.0e-80 301.6 243 64.6
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.2e-79 300.8 302 55.3
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 1.6e-79 300.4 224 66.5
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 2.6e-79 299.7 227 65.2
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 2.6e-79 299.7 269 57.2
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 3.5e-79 299.3 219 68.9
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 4.5e-79 298.9 222 64.9
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 4.5e-79 298.9 302 56.0
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 7.7e-79 298.1 265 60.4
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 1.0e-78 297.7 307 52.8
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.3e-78 297.4 246 63.0
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 2.2e-78 296.6 266 58.6
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 2.2e-78 296.6 226 64.6
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 2.2e-78 296.6 297 55.2
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 2.9e-78 296.2 302 55.0
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 2.9e-78 296.2 294 55.4
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 2.9e-78 296.2 285 56.1
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 2.9e-78 296.2 300 52.0
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 1.1e-77 294.3 306 53.3
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.9e-77 293.5 327 54.1
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 5.5e-77 292.0 234 62.8
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 7.2e-77 291.6 325 54.5
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 2.1e-76 290.0 234 60.7
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 3.6e-76 289.3 320 54.7
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 8.0e-76 288.1 222 63.5
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 8.0e-76 288.1 229 62.0
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 1.0e-75 287.7 247 61.5
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 2.3e-75 286.6 308 53.2
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 3.0e-75 286.2 279 58.1
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 6.7e-75 285.0 298 54.0
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 1.2e-74 284.3 233 63.1
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 2.0e-74 283.5 255 56.9
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 2.6e-74 283.1 255 56.9
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 7.5e-74 281.6 299 51.5
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 4.8e-73 278.9 303 51.5
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 6.3e-73 278.5 247 59.5
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.3e-73 278.5 267 56.9
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 6.3e-73 278.5 256 57.0
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 1.1e-72 277.7 244 58.6
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 1.8e-72 276.9 253 59.3
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 3.1e-72 276.2 315 51.7
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 7.0e-72 275.0 246 58.5
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 9.1e-72 274.6 255 56.1
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 1.2e-71 274.2 298 52.7
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 9.4e-69 264.6 199 64.3
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 2.0e-66 256.9 264 53.0
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 2.6e-66 256.5 355 44.5
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 2.6e-66 256.5 304 48.7
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 4.1e-64 249.2 250 54.0
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 4.5e-63 245.7 198 63.6
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 6.5e-62 241.9 221 55.2
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 4.2e-61 239.2 302 48.7
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 5.7e-58 228.8 227 52.9
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 1.3e-57 227.6 238 50.4
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 1.0e-54 218.0 183 60.1
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 1.7e-54 217.2 182 60.4
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 3.8e-54 216.1 142 74.6
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 1.1e-53 214.5 150 68.7
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 9.5e-53 211.5 221 54.3
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 1.8e-48 197.2 249 47.0
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 2.3e-46 190.3 233 45.9
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 1.1e-45 188.0 229 44.1
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 9.5e-45 184.9 186 54.3
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.6e-44 184.1 181 58.6
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 4.6e-39 166.0 216 44.0
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 4.6e-39 166.0 216 44.0
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 6.0e-39 165.6 233 42.1
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 1.3e-38 164.5 213 43.7
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 9.2e-32 141.7 195 40.0
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 4.9e-25 119.4 90 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 1.4e-24 117.9 179 42.5
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 2.4e-24 117.1 81 69.1
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 1.6e-23 114.4 251 33.5
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 1.4e-11 74.7 56 66.1
PRCOL_00005055 Prasinoderma coloniale HOM05D006231 ORTHO05D007857 1.0e-06 58.5 179 26.3
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 6.7e-06 55.8 87 40.2


User provided reference genes

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