Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 5.9e-83 312.8 609 100.0
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 2.7e-27 127.9 98 67.3
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.1e-25 122.5 100 68.0
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 9.6e-25 119.4 87 70.1
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 1.6e-24 118.6 98 64.3
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 3.7e-24 117.5 86 72.1
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.1e-23 115.9 98 64.3
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 3.1e-23 114.4 86 67.4
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 9.0e-23 112.8 97 61.9
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 2.0e-22 111.7 99 58.6
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 3.4e-22 110.9 98 59.2
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 7.6e-22 109.8 95 58.9
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 1.3e-21 109.0 88 63.6
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.7e-21 108.6 97 60.8
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 2.9e-21 107.8 94 58.5
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 4.9e-21 107.1 98 60.2
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.2e-20 104.0 99 57.6
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 4.2e-20 104.0 99 57.6
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 5.5e-20 103.6 98 58.2
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 7.1e-20 103.2 97 57.7
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 7.1e-20 103.2 98 54.1
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 7.1e-20 103.2 99 57.6
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 1.2e-19 102.4 97 55.7
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.6e-19 102.1 97 54.6
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 1.6e-19 102.1 86 61.6
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 1.6e-19 102.1 97 54.6
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 2.1e-19 101.7 100 60.0
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 2.1e-19 101.7 72 68.1
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 2.7e-19 101.3 98 57.1
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 2.7e-19 101.3 97 54.6
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 7.9e-19 99.8 97 54.6
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.3e-18 99.0 86 60.5
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 2.3e-18 98.2 94 56.4
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 3.0e-18 97.8 96 59.4
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 3.0e-18 97.8 97 55.7
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 8.7e-18 96.3 89 56.2
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 8.7e-18 96.3 86 59.3
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 1.5e-17 95.5 96 56.2
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.9e-17 95.1 97 51.5
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 2.5e-17 94.7 88 56.8
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 2.5e-17 94.7 97 58.8
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 4.3e-17 94.0 99 51.5
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 5.7e-17 93.6 140 43.6
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 5.7e-17 93.6 94 58.5
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 9.7e-17 92.8 68 66.2
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 9.7e-17 92.8 63 69.8
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 1.3e-16 92.4 90 60.0
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 1.6e-16 92.0 100 52.0
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 2.2e-16 91.7 101 51.5
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 3.7e-16 90.9 92 53.3
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 4.8e-16 90.5 98 52.0
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 6.3e-16 90.1 93 54.8
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 6.3e-16 90.1 100 53.0
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 6.3e-16 90.1 63 68.3
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 6.3e-16 90.1 99 49.5
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.3e-16 90.1 99 49.5
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 6.3e-16 90.1 63 66.7
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 8.2e-16 89.7 98 50.0
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 8.2e-16 89.7 86 57.0
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 1.1e-15 89.4 94 54.3
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 1.1e-15 89.4 94 54.3
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.1e-15 89.4 63 68.3
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.1e-15 89.4 91 52.7
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 1.1e-15 89.4 98 51.0
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 1.4e-15 89.0 83 54.2
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.4e-15 89.0 65 70.8
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.8e-15 88.6 99 48.5
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.8e-15 88.6 63 68.3
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 2.4e-15 88.2 84 56.0
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.4e-15 88.2 84 56.0
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 2.4e-15 88.2 62 71.0
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 2.4e-15 88.2 62 69.4
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 2.4e-15 88.2 88 55.7
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.1e-15 87.8 91 52.7
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 4.1e-15 87.4 86 53.5
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 4.1e-15 87.4 86 53.5
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 4.1e-15 87.4 89 53.9
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.1e-15 87.4 62 67.7
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 4.1e-15 87.4 62 67.7
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 4.1e-15 87.4 90 53.3
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 4.1e-15 87.4 63 63.5
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 5.3e-15 87.0 94 51.1
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 6.9e-15 86.7 71 62.0
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 9.0e-15 86.3 98 49.0
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 9.0e-15 86.3 93 49.5
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.2e-14 85.9 69 63.8
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.2e-14 85.9 69 65.2
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.2e-14 85.9 89 55.1
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 1.2e-14 85.9 63 65.1
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 1.5e-14 85.5 68 58.8
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 1.5e-14 85.5 68 58.8
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 1.5e-14 85.5 68 58.8
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 1.5e-14 85.5 68 58.8
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 1.5e-14 85.5 68 58.8
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 1.5e-14 85.5 84 51.2
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.5e-14 85.5 72 56.9
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 2.0e-14 85.1 82 53.7
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 2.0e-14 85.1 80 57.5
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 2.6e-14 84.7 72 54.2
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 2.6e-14 84.7 64 59.4
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 2.6e-14 84.7 63 65.1
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.5e-14 84.0 62 66.1
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 5.9e-14 83.6 83 49.4
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 7.6e-14 83.2 55 74.5
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 1.3e-13 82.4 86 46.5
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.3e-13 82.4 83 48.2
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 1.3e-13 82.4 98 45.9
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 1.7e-13 82.0 81 48.1
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.7e-13 82.0 83 48.2
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.7e-13 82.0 72 52.8
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 2.2e-13 81.6 68 57.4
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 2.9e-13 81.3 83 47.0
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 2.9e-13 81.3 83 47.0
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 3.8e-13 80.9 80 48.8
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 3.8e-13 80.9 63 57.1
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 3.8e-13 80.9 92 43.5
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 3.8e-13 80.9 63 58.7
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 5.0e-13 80.5 99 46.5
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 5.0e-13 80.5 79 50.6
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 5.0e-13 80.5 79 50.6
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 5.0e-13 80.5 99 45.5
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 5.0e-13 80.5 88 52.3
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 6.5e-13 80.1 64 60.9
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 6.5e-13 80.1 83 45.8
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 6.5e-13 80.1 92 42.4
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 8.5e-13 79.7 99 45.5
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 8.5e-13 79.7 78 51.3
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 8.5e-13 79.7 63 58.7
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 8.5e-13 79.7 68 58.8
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 8.5e-13 79.7 67 58.2
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 8.5e-13 79.7 67 53.7
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 1.1e-12 79.3 83 48.2
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 1.4e-12 79.0 63 57.1
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 1.4e-12 79.0 79 49.4
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 1.9e-12 78.6 99 44.4
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 1.9e-12 78.6 86 51.2
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.5e-12 78.2 78 50.0
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 2.5e-12 78.2 99 42.4
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 2.5e-12 78.2 99 42.4
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 2.5e-12 78.2 100 42.0
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 3.2e-12 77.8 85 49.4
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 5.5e-12 77.0 99 41.4
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 1.2e-11 75.9 63 54.0
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 1.2e-11 75.9 63 55.6
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 1.2e-11 75.9 84 53.6
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 1.6e-11 75.5 59 59.3
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.6e-11 75.5 68 54.4
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 3.6e-11 74.3 73 54.8
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 4.6e-11 73.9 81 46.9
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 7.9e-11 73.2 76 46.1
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.0e-10 72.8 63 50.8
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.0e-10 72.8 63 50.8
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 1.4e-10 72.4 44 79.5
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 5.1e-10 70.5 82 43.9
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 8.8e-10 69.7 52 63.5
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.9e-09 68.6 52 61.5
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 5.7e-09 67.0 91 44.0
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 5.7e-09 67.0 51 58.8
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 7.4e-09 66.6 52 59.6
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 9.7e-09 66.2 66 53.0
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 9.7e-09 66.2 69 46.4
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 1.7e-08 65.5 52 57.7
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 2.2e-08 65.1 69 44.9
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 4.8e-08 63.9 45 64.4
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 8.2e-08 63.2 57 47.4
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 5.3e-07 60.5 44 65.9
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 5.3e-07 60.5 45 57.8
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 5.3e-07 60.5 33 87.9
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 6.9e-07 60.1 49 57.1
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 6.9e-07 60.1 49 57.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 9.1e-07 59.7 44 56.8
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 9.1e-07 59.7 44 65.9
MD02G1045100 Malus domestica HOM05D003689 ORTHO05D003950 4.5e-06 57.4 69 52.2


User provided reference genes

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