Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 1.0e-54 216.5 109 100.0
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.5e-40 169.5 90 88.9
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 7.2e-40 167.2 90 90.0
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 1.6e-39 166.0 90 87.8
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 2.6e-37 158.7 90 84.4
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 3.3e-37 158.3 90 84.4
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 7.5e-37 157.1 90 80.0
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 3.7e-36 154.8 90 82.2
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 4.8e-36 154.5 90 84.4
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 6.3e-36 154.1 90 80.0
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 8.2e-36 153.7 90 83.3
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.4e-35 152.9 90 84.4
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.4e-35 152.9 90 84.4
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 1.4e-35 152.9 90 81.1
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 3.1e-35 151.8 90 78.9
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 4.1e-35 151.4 90 81.1
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 4.1e-35 151.4 90 80.0
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 7.0e-35 150.6 90 78.9
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 9.1e-35 150.2 90 81.1
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 9.1e-35 150.2 90 81.1
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 1.2e-34 149.8 90 81.1
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 1.2e-34 149.8 90 77.8
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.2e-34 149.8 90 77.8
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.6e-34 149.4 90 80.0
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 1.6e-34 149.4 90 81.1
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.0e-34 149.1 90 80.0
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 2.0e-34 149.1 107 72.9
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 2.7e-34 148.7 90 77.8
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 2.7e-34 148.7 90 80.0
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 3.5e-34 148.3 90 78.9
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 3.5e-34 148.3 90 81.1
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 4.5e-34 147.9 90 78.9
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 4.5e-34 147.9 102 74.5
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 4.5e-34 147.9 90 76.7
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 7.7e-34 147.1 90 78.9
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 1.0e-33 146.7 90 78.9
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 1.0e-33 146.7 90 78.9
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 1.0e-33 146.7 88 80.7
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.3e-33 146.4 90 80.0
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.3e-33 146.4 90 77.8
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 1.3e-33 146.4 107 70.1
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.7e-33 146.0 90 76.7
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 1.7e-33 146.0 110 68.2
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 2.2e-33 145.6 90 77.8
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 2.2e-33 145.6 89 78.7
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 2.9e-33 145.2 90 75.6
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 2.9e-33 145.2 90 77.8
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 2.9e-33 145.2 90 75.6
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.9e-33 145.2 90 75.6
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.9e-33 145.2 90 80.0
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 3.8e-33 144.8 90 75.6
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 5.0e-33 144.4 90 77.8
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 5.0e-33 144.4 90 77.8
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 5.0e-33 144.4 90 76.7
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 5.0e-33 144.4 90 77.8
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 6.5e-33 144.1 90 75.6
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 6.5e-33 144.1 90 73.3
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 6.5e-33 144.1 90 76.7
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 6.5e-33 144.1 90 76.7
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 8.5e-33 143.7 90 75.6
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 8.5e-33 143.7 90 75.6
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 8.5e-33 143.7 81 84.0
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 8.5e-33 143.7 90 75.6
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 1.1e-32 143.3 90 75.6
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 1.1e-32 143.3 90 76.7
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 1.1e-32 143.3 90 74.4
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.5e-32 142.9 90 75.6
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.5e-32 142.9 90 74.4
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 1.9e-32 142.5 90 75.6
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.9e-32 142.5 90 73.3
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.5e-32 142.1 90 73.3
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 2.5e-32 142.1 90 76.7
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.5e-32 142.1 90 77.8
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 3.2e-32 141.7 90 74.4
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 3.2e-32 141.7 90 74.4
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.2e-32 141.7 90 76.7
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.2e-32 141.7 90 76.7
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 3.2e-32 141.7 90 77.8
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 4.2e-32 141.4 90 73.3
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 5.5e-32 141.0 89 74.2
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 5.5e-32 141.0 90 74.4
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 5.5e-32 141.0 90 75.6
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 5.5e-32 141.0 90 74.4
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 7.2e-32 140.6 90 75.6
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 9.4e-32 140.2 90 71.1
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 9.4e-32 140.2 90 71.1
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 9.4e-32 140.2 90 76.7
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 1.2e-31 139.8 90 75.6
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 1.2e-31 139.8 92 73.9
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 2.1e-31 139.0 108 64.8
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 4.7e-31 137.9 90 72.2
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 6.1e-31 137.5 88 73.9
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 6.1e-31 137.5 88 78.4
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 8.0e-31 137.1 91 75.8
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.3e-30 135.6 90 72.2
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 2.3e-30 135.6 93 72.0
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 2.3e-30 135.6 90 73.3
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 3.0e-30 135.2 90 71.1
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 4.0e-30 134.8 93 72.0
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 5.2e-30 134.4 90 71.1
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 6.8e-30 134.0 90 70.0
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.2e-29 133.3 90 70.0
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 3.4e-29 131.7 97 61.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 4.4e-29 131.3 103 61.2
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 5.7e-29 131.0 99 69.7
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 7.5e-29 130.6 91 73.6
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.3e-28 129.8 116 59.5
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.7e-28 129.4 90 70.0
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 2.2e-28 129.0 94 69.1
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 3.7e-28 128.3 90 70.0
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 8.3e-28 127.1 82 73.2
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 8.3e-28 127.1 90 65.6
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 5.4e-27 124.4 90 70.0
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 7.0e-27 124.0 82 73.2
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 2.7e-26 122.1 90 64.4
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.0e-25 120.2 92 64.1
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 1.0e-25 120.2 90 63.3
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 3.8e-25 118.2 85 69.4
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 2.5e-24 115.5 92 67.4
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.1e-23 112.5 86 66.3
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.7e-23 111.3 88 59.1
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.4e-22 109.8 90 57.8
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 2.3e-22 109.0 90 56.7
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 2.2e-20 102.4 92 54.3
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 1.1e-19 100.1 79 65.8
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.2e-18 96.7 60 80.0
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 3.5e-18 95.1 90 50.0
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.7e-17 92.8 90 44.4
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 6.6e-17 90.9 88 50.0
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 7.3e-16 87.4 48 83.3
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 7.3e-16 87.4 48 85.4
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.7e-15 84.7 70 58.6
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.2e-13 80.1 49 73.5
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 1.3e-12 76.6 47 74.5
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 3.7e-12 75.1 47 70.2
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 5.4e-11 71.2 67 56.7
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 5.4e-11 71.2 67 56.7
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 2.7e-10 68.9 89 41.6
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 2.3e-09 65.9 56 58.9
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.3e-09 65.9 42 69.0
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 6.6e-09 64.3 103 41.7
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.9e-08 62.8 59 52.5
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 9.5e-08 60.5 55 52.7
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.8e-06 56.2 60 55.0


User provided reference genes

Program Settings