Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 6.7e-179 630.6 315 100.0
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 1.5e-138 496.5 313 76.0
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 5.3e-136 488.0 313 74.8
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 1.4e-128 463.4 312 72.1
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 1.3e-126 456.8 312 70.5
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 7.2e-125 451.1 313 71.6
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 1.2e-124 450.3 312 69.9
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 2.7e-124 449.1 312 71.2
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 4.0e-123 445.3 313 70.0
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 6.8e-123 444.5 313 69.6
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 3.4e-122 442.2 312 69.2
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 4.4e-122 441.8 313 69.6
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 1.7e-121 439.9 309 70.2
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 2.2e-121 439.5 313 68.7
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 2.8e-121 439.1 313 68.1
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.1e-120 437.2 313 67.7
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.8e-120 436.4 313 68.1
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 1.7e-118 429.9 313 67.7
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 5.0e-118 428.3 313 68.1
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 2.5e-117 426.0 313 64.9
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 1.2e-116 423.7 314 64.6
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 2.8e-116 422.5 312 65.7
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 6.1e-116 421.4 314 65.9
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.4e-115 420.2 314 65.6
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 1.8e-115 419.9 313 63.9
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.3e-115 419.5 287 72.5
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 5.2e-115 418.3 313 64.2
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 5.2e-115 418.3 313 63.9
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 8.8e-115 417.5 313 63.6
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 1.5e-114 416.8 312 64.1
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 5.7e-114 414.8 313 63.9
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 2.2e-113 412.9 314 65.0
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 2.8e-113 412.5 314 65.0
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 2.8e-113 412.5 314 65.0
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 2.8e-113 412.5 313 64.2
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 6.3e-113 411.4 299 67.2
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 1.4e-112 410.2 313 62.6
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 1.8e-112 409.8 313 62.3
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 9.2e-112 407.5 313 64.9
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 9.2e-112 407.5 313 63.9
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 1.7e-110 403.3 315 63.8
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 2.3e-110 402.9 313 61.7
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 1.5e-109 400.2 313 60.1
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 2.5e-109 399.4 313 62.0
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 3.3e-109 399.1 316 62.0
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 5.6e-109 398.3 312 60.3
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 9.5e-109 397.5 313 60.7
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.2e-108 397.1 312 60.6
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.6e-108 396.7 313 60.4
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 2.1e-108 396.4 313 60.4
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 4.7e-108 395.2 313 62.0
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 1.4e-107 393.7 313 62.3
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 1.4e-107 393.7 267 70.4
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 1.8e-107 393.3 314 63.1
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 8.9e-107 391.0 313 60.7
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 2.6e-106 389.4 313 60.4
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 2.6e-106 389.4 313 60.4
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 3.4e-106 389.0 313 60.4
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 2.2e-105 386.3 314 60.5
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 2.9e-105 386.0 313 59.7
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 3.7e-105 385.6 292 66.4
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 4.6e-103 378.6 313 59.1
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 4.6e-103 378.6 313 59.1
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 4.6e-103 378.6 314 59.6
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 5.9e-103 378.3 313 62.6
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 7.8e-103 377.9 313 58.5
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 8.6e-102 374.4 313 58.1
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 1.1e-101 374.0 319 56.7
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 2.5e-101 372.9 313 58.1
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 3.3e-101 372.5 313 57.8
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 4.3e-101 372.1 313 58.1
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 7.3e-101 371.3 313 57.8
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 2.1e-100 369.8 312 57.1
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 1.3e-97 360.5 246 69.9
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 1.7e-97 360.1 305 58.0
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 7.0e-96 354.8 354 53.7
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 1.2e-95 354.0 232 75.0
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 1.6e-95 353.6 237 71.7
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 2.0e-95 353.2 234 73.1
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 4.6e-95 352.1 297 58.9
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 1.0e-94 350.9 311 57.2
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 1.7e-94 350.1 237 70.5
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 2.5e-93 346.3 313 55.0
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 2.5e-93 346.3 250 68.4
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 3.1e-91 339.3 246 64.6
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 2.6e-90 336.3 313 54.0
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 6.4e-89 331.6 312 55.1
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 1.1e-88 330.9 231 68.0
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 2.4e-88 329.7 232 68.1
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 8.6e-86 321.2 223 70.0
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 6.2e-84 315.1 218 68.3
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 6.8e-83 311.6 208 72.1
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 2.9e-81 306.2 208 69.2
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 8.4e-81 304.7 315 49.2
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 9.2e-80 301.2 315 48.3
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 2.3e-78 296.6 290 54.1
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 2.3e-78 296.6 318 50.6
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 5.2e-75 285.4 299 49.2
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 5.8e-74 282.0 248 56.5
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 2.2e-73 280.0 282 51.8
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 2.1e-71 273.5 205 67.3
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 4.8e-68 262.3 314 47.1
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 3.4e-50 203.0 175 58.9
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 2.7e-47 193.4 151 65.6
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.1e-43 181.4 199 49.2
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 3.8e-41 172.9 167 51.5
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 1.7e-36 157.5 168 49.4
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 3.6e-31 139.8 186 45.7
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 5.7e-29 132.5 207 37.7
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 3.3e-21 106.7 125 42.4
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 2.6e-18 97.1 248 30.2
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 4.7e-15 86.3 174 33.3
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 3.3e-13 80.1 243 30.5
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 9.7e-13 78.6 203 30.5
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 2.2e-12 77.4 215 29.3
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 2.2e-12 77.4 195 30.3
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 3.7e-12 76.6 195 30.8
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 6.3e-12 75.9 184 31.0
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 3.1e-11 73.6 187 29.9
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 9.1e-11 72.0 203 29.1
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 1.6e-10 71.2 199 31.2
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 1.6e-10 71.2 186 29.6
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 2.0e-10 70.9 196 29.6
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 4.5e-10 69.7 196 29.6
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 4.5e-10 69.7 201 26.4
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 5.9e-10 69.3 184 31.0
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 5.9e-10 69.3 195 28.2
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 7.7e-10 68.9 184 31.0
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 7.7e-10 68.9 196 30.6
RcHm_v2.0_Chr3g0448241 Rosa chinensis HOM05D000001 ORTHO05D000003 1.7e-09 67.8 272 26.1
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.9e-09 67.0 201 25.9
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.9e-09 67.0 201 25.9
Prupe.4G268300 Prunus persica HOM05D000001 ORTHO05D000003 2.9e-09 67.0 269 26.0
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 5.0e-09 66.2 190 26.8
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 5.0e-09 66.2 185 29.2
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 1.1e-08 65.1 157 33.1
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 2.5e-08 63.9 154 29.9
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 3.2e-08 63.5 40 72.5
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 4.2e-08 63.2 200 27.5
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 7.2e-08 62.4 150 31.3
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 7.2e-08 62.4 158 30.4
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 9.4e-08 62.0 157 33.1
MD03G1167900 Malus domestica HOM05D000001 ORTHO05D000003 9.4e-08 62.0 263 22.8
FAN25G0122 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-07 61.2 239 24.7
FAN25G0874 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.6e-07 61.2 239 24.7
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 1.6e-07 61.2 153 30.7
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 2.1e-07 60.8 197 28.9
FAN16G1783 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.6e-07 60.1 243 25.1
FAN21G2622 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.6e-07 60.1 243 24.7
FvH4_3g28010 Fragaria vesca HOM05D000001 ORTHO05D000003 6.1e-07 59.3 240 25.0
FAN11G1860 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.1e-07 59.3 240 25.0
Lalb_Chr06g0172791 Lupinus albus HOM05D006258 ORTHO05D007961 2.3e-06 57.4 204 24.5
arahy.Tifrunner.gnm1.ann1.FEEJ53 Arachis hypogaea HOM05D006258 ORTHO05D007961 4.0e-06 56.6 211 23.7
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 4.0e-06 56.6 46 50.0
CBR_g10841 Chara braunii HOM05D001779 ORTHO05D001753 6.8e-06 55.8 90 31.1
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 8.8e-06 55.5 168 29.2


User provided reference genes

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