Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 0.0e+00 1733.4 879 100.0
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 0.0e+00 1145.2 948 64.9
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 0.0e+00 1135.6 878 67.8
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 0.0e+00 1132.9 887 68.2
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.2e-281 973.4 874 58.5
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 8.4e-280 967.2 874 58.1
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.2e-278 963.4 877 58.3
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.9e-276 956.1 876 57.8
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 7.3e-276 954.1 882 57.4
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 2.1e-267 926.0 747 63.9
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 5.3e-266 921.4 879 56.4
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 6.9e-266 921.0 878 56.6
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.1e-262 909.4 912 54.4
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 1.8e-261 906.4 876 56.1
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 2.3e-261 906.0 893 56.2
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.0e-256 890.6 881 54.9
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.8e-256 888.6 883 54.1
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 8.4e-256 887.5 861 55.9
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 5.5e-255 884.8 875 56.5
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.9e-253 878.6 880 55.3
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.1e-253 878.2 880 55.8
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 4.3e-252 875.2 887 53.3
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 6.2e-251 871.3 887 53.9
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 2.4e-250 869.4 879 53.0
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 2.2e-248 862.8 883 53.5
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.4e-247 860.1 892 53.0
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.5e-247 858.2 885 52.8
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 5.5e-247 858.2 879 52.3
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.1e-247 857.8 889 52.6
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 7.1e-247 857.8 884 53.5
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.6e-246 856.7 888 52.6
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.6e-246 856.7 880 52.6
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 2.1e-246 856.3 878 54.1
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 2.7e-246 855.9 878 53.3
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.0e-245 854.0 888 52.4
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 3.0e-245 852.4 882 54.2
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.4e-242 842.8 882 52.4
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.2e-239 831.2 886 51.9
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.6e-238 830.1 882 52.7
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.7e-237 824.7 886 51.5
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 2.0e-233 813.1 744 57.9
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.6e-230 803.5 881 49.8
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 2.3e-229 799.7 883 50.4
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 6.7e-229 798.1 880 50.2
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 2.6e-228 796.2 842 51.0
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 7.0e-226 788.1 921 48.9
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.5e-225 785.8 891 50.1
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.8e-224 782.3 905 49.3
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 2.1e-222 776.5 829 51.5
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.4e-221 773.9 883 48.9
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 3.9e-221 772.3 890 48.1
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 4.4e-220 768.8 883 48.5
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 4.1e-218 762.3 648 62.5
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 9.1e-218 761.1 942 46.5
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 3.5e-217 759.2 888 48.1
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 4.5e-217 758.8 892 48.3
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 5.5e-215 751.9 882 48.5
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.6e-214 750.4 884 48.2
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 6.1e-214 748.4 882 47.7
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.4e-213 747.3 884 48.3
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 2.6e-212 743.0 861 50.5
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 7.5e-212 741.5 870 48.3
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.4e-210 736.5 948 46.2
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 4.1e-210 735.7 906 47.1
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.4e-210 735.3 857 48.8
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.0e-209 733.4 882 46.4
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 2.2e-208 729.9 877 47.7
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 8.5e-208 728.0 932 46.8
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.2e-206 724.2 881 46.1
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 4.7e-206 722.2 900 46.4
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.8e-205 720.3 698 54.4
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 4.9e-203 712.2 892 47.1
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 6.3e-203 711.8 883 46.4
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 2.7e-201 706.4 883 46.4
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 8.6e-200 701.4 866 46.8
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.5e-199 700.7 881 46.3
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.5e-199 700.7 887 45.4
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 3.3e-199 699.5 696 53.9
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.8e-194 683.7 730 52.9
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 5.4e-194 682.2 879 44.1
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 7.8e-193 678.3 891 45.1
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.7e-192 677.2 904 44.5
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 3.3e-191 672.9 885 44.3
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.2e-190 671.0 882 45.2
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.0e-189 667.9 890 44.8
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.0e-189 667.9 887 43.9
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 1.4e-189 667.5 894 43.6
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 3.1e-189 666.4 894 43.5
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 4.4e-188 662.5 894 43.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.3e-187 661.0 894 43.1
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.3e-187 661.0 823 44.8
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.7e-187 660.6 877 43.8
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.0e-184 651.4 878 43.4
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.5e-183 646.7 728 49.0
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 6.8e-181 638.6 715 49.8
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.5e-180 637.5 683 52.7
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.3e-179 634.4 886 42.2
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.3e-179 634.4 856 44.3
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.0e-176 624.8 874 43.4
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.1e-169 600.5 702 48.9
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.2e-162 576.6 893 40.3
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 6.0e-161 572.4 626 49.5
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 8.7e-160 568.5 632 48.6
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 2.9e-155 553.5 670 45.2
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.1e-149 535.0 701 44.8
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.5e-148 531.2 872 38.4
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.3e-144 518.1 753 45.7
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 9.0e-141 505.4 603 49.1
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 9.0e-133 478.8 880 36.1
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.5e-132 478.0 773 39.2
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 6.1e-129 466.1 782 37.2
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 4.6e-121 439.9 550 45.1
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.8e-120 438.0 903 35.3
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.9e-106 391.3 688 37.5
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 3.0e-104 384.0 243 82.7
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 3.0e-104 384.0 262 74.0
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 9.7e-103 379.0 542 40.0
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.7e-97 360.1 239 78.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.8e-85 321.6 250 67.2
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 9.2e-85 319.3 956 28.5
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 9.2e-85 319.3 956 28.5
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.0e-83 315.8 820 31.3
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 6.1e-81 306.6 733 31.1
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 4.0e-80 303.9 198 79.8
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 4.0e-80 303.9 946 26.7
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.4e-77 295.4 400 43.8
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 5.0e-75 287.0 193 75.6
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 6.0e-68 263.5 191 69.6
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 3.9e-67 260.8 199 64.8
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.6e-65 255.4 570 30.2
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.4e-61 240.4 195 57.9
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 7.1e-61 240.0 190 60.0
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 9.5e-58 229.6 354 37.3
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-56 225.7 337 37.7
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.2e-55 222.6 266 48.9
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.4e-53 214.9 675 29.2
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.3e-51 209.1 144 76.4
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.4e-48 199.1 265 40.4
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.4e-48 198.4 236 43.2
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 6.9e-48 196.8 332 38.0
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 9.3e-45 186.4 191 49.7
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.0e-43 181.4 217 44.2
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.7e-43 179.9 229 44.1
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 7.3e-42 176.8 142 65.5
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.2e-39 169.5 155 55.5
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 5.8e-39 167.2 220 41.4
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 8.4e-38 163.3 108 75.0
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 2.0e-31 142.1 178 42.7
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.1e-29 136.3 84 83.3
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 2.1e-25 122.1 89 74.2
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 2.4e-24 118.6 91 64.8
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 2.6e-23 115.2 82 68.3
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.3e-22 112.8 258 31.4
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.7e-22 112.5 100 60.0
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.7e-20 105.1 201 34.3
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 3.3e-18 98.2 188 33.5
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 1.2e-15 89.7 181 34.3
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.2e-12 79.7 170 33.5
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 2.1e-12 79.0 119 35.3
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.5e-10 72.8 50 68.0
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.3e-10 71.6 109 41.3
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 5.9e-07 60.8 63 52.4
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 6.5e-06 57.4 97 36.1


User provided reference genes

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