Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.2e-55 219.5 108 100.0
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 3.2e-48 194.9 108 88.0
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 3.9e-46 188.0 104 86.5
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.1e-45 186.4 108 83.3
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 2.5e-45 185.3 108 79.6
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 1.3e-44 183.0 108 79.6
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 4.8e-44 181.0 108 81.5
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 3.1e-43 178.3 108 77.8
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 5.3e-43 177.6 108 78.7
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 1.3e-41 172.9 109 79.8
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.2e-41 172.2 108 77.8
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 8.4e-41 170.2 108 76.9
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.5e-40 168.7 108 75.0
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 3.2e-40 168.3 108 75.0
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 3.2e-40 168.3 108 77.8
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 4.2e-40 167.9 109 76.1
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 9.3e-40 166.8 108 74.1
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 2.7e-39 165.2 108 74.1
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 1.0e-38 163.3 108 71.3
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 1.3e-38 162.9 108 72.2
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.9e-37 159.1 109 72.5
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 2.5e-37 158.7 109 73.4
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.5e-37 158.7 108 69.4
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 3.3e-37 158.3 109 71.6
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.3e-37 157.9 108 71.3
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 5.7e-37 157.5 109 71.6
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 5.7e-37 157.5 108 69.4
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 9.7e-37 156.8 108 71.3
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 1.3e-36 156.4 108 71.3
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 68.5
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 71.3
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 2.2e-36 155.6 108 69.4
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 2.2e-36 155.6 109 70.6
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 2.2e-36 155.6 108 70.4
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 2.8e-36 155.2 108 70.4
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 6.3e-36 154.1 109 69.7
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 6.3e-36 154.1 108 70.4
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 6.3e-36 154.1 109 71.6
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 67.6
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 67.6
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 1.8e-35 152.5 90 77.8
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.8e-35 152.5 94 75.5
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 4.1e-35 151.4 108 66.7
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 4.1e-35 151.4 108 67.6
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 5.3e-35 151.0 108 66.7
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 5.3e-35 151.0 108 67.6
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 5.3e-35 151.0 109 70.6
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 6.9e-35 150.6 109 70.6
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 9.0e-35 150.2 108 68.5
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 67.6
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.2e-34 149.8 109 67.9
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.0e-34 149.1 108 69.4
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.0e-34 149.1 108 66.7
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 2.0e-34 149.1 107 66.4
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 2.6e-34 148.7 110 67.3
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 5.9e-34 147.5 109 68.8
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 7.6e-34 147.1 109 70.6
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 7.6e-34 147.1 108 64.8
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 7.6e-34 147.1 108 64.8
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 7.6e-34 147.1 108 64.8
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.0e-33 146.7 108 63.0
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 62.0
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 62.0
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.2e-33 145.6 108 63.0
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.2e-33 145.6 108 65.7
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 2.2e-33 145.6 109 66.1
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 2.2e-33 145.6 107 64.5
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 2.9e-33 145.2 108 62.0
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.9e-33 145.2 108 63.0
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 2.9e-33 145.2 109 65.1
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.9e-33 145.2 108 62.0
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 3.8e-33 144.8 108 63.9
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 5.0e-33 144.4 108 63.0
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 8.5e-33 143.7 86 82.6
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.4e-32 142.9 109 67.0
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.4e-32 142.9 109 65.1
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.4e-32 142.9 109 65.1
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.9e-32 142.5 109 66.1
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 2.5e-32 142.1 108 62.0
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.5e-32 142.1 86 81.4
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.5e-32 142.1 108 62.0
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 60.2
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 60.2
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 67.6
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 5.5e-32 141.0 108 63.9
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 5.5e-32 141.0 108 59.3
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 9.3e-32 140.2 109 61.5
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 9.3e-32 140.2 108 66.7
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 4.6e-31 137.9 108 62.0
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 7.9e-31 137.1 109 59.6
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 7.9e-31 137.1 108 62.0
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.0e-30 136.7 109 60.6
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 1.0e-30 136.7 108 60.2
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 1.0e-30 136.7 108 60.2
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.8e-30 136.0 108 59.3
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 2.3e-30 135.6 108 63.9
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 60.2
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 5.1e-30 134.4 109 60.6
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 8.8e-30 133.7 109 59.6
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 8.8e-30 133.7 108 60.2
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 61.1
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.9e-29 132.5 104 62.5
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 58.3
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 2.5e-29 132.1 101 67.3
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 3.3e-29 131.7 108 59.3
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 60.2
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 5.7e-29 131.0 110 57.3
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 7.4e-29 130.6 108 58.3
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 1.7e-28 129.4 112 58.9
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 4.8e-28 127.9 90 70.0
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 6.3e-28 127.5 84 75.0
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 1.4e-27 126.3 88 69.3
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 60.2
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 1.8e-27 125.9 92 66.3
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 2.4e-27 125.6 96 60.4
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 3.1e-27 125.2 104 62.5
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.2e-26 123.2 109 58.7
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 1.2e-26 123.2 109 56.9
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 2.0e-26 122.5 109 57.8
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 2.0e-26 122.5 99 57.6
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 4.5e-26 121.3 71 73.2
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.3e-25 119.8 87 70.1
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 57.4
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 1.7e-25 119.4 108 54.6
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 2.2e-25 119.0 84 70.2
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 2.2e-25 119.0 109 56.0
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 5.0e-25 117.9 98 64.3
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 6.5e-25 117.5 109 53.2
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 6.5e-25 117.5 109 55.0
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 3.2e-24 115.2 109 55.0
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 5.5e-24 114.4 84 64.3
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 5.5e-24 114.4 84 64.3
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 9.4e-24 113.6 89 62.9
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.7e-23 112.1 83 66.3
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 4.7e-23 111.3 94 54.3
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 4.7e-23 111.3 84 64.3
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 7.9e-23 110.5 88 64.8
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 1.4e-22 109.8 66 83.3
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 3.0e-22 108.6 97 54.6
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 3.0e-22 108.6 108 50.9
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 2.0e-21 105.9 85 62.4
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 3.3e-21 105.1 108 48.1
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.3e-20 103.2 94 57.4
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 2.6e-18 95.5 86 59.3
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 5.9e-18 94.4 101 46.5
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 5.9e-18 94.4 74 68.9
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 5.0e-17 91.3 101 45.5
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 2.5e-16 89.0 109 42.2
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 4.2e-16 88.2 106 39.6
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 1.6e-15 86.3 82 58.5
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 2.1e-15 85.9 88 53.4
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 8.0e-15 84.0 83 51.8
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 5.7e-13 77.8 61 63.9
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 9.1e-11 70.5 112 40.2
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 7.7e-10 67.4 66 50.0
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 1.6e-07 59.7 110 33.6


User provided reference genes

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