Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 1.8e-226 788.9 394 100.0
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 6.8e-173 610.9 373 79.4
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 9.5e-167 590.5 370 78.6
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.8e-166 589.0 369 79.9
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.6e-164 582.4 369 78.6
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.6e-164 580.9 370 78.1
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 2.4e-162 575.9 355 79.4
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 3.0e-160 568.9 386 76.7
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 1.2e-158 563.5 371 75.7
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 2.1e-158 562.8 367 77.1
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 8.1e-158 560.8 361 77.0
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 1.4e-157 560.1 369 74.8
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.1e-157 558.9 309 84.5
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 5.2e-157 558.1 369 74.0
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 6.9e-157 557.8 370 75.7
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.9e-157 557.8 370 74.9
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 9.0e-157 557.4 371 75.7
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 9.0e-157 557.4 370 75.7
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.2e-156 557.0 370 75.1
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 1.2e-156 557.0 371 75.2
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 2.0e-156 556.2 308 84.7
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.6e-156 555.8 390 73.6
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.4e-156 555.4 368 74.7
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 4.4e-156 555.1 371 73.0
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 1.3e-155 553.5 371 75.5
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 6.4e-155 551.2 375 73.6
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.4e-154 550.1 370 73.5
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 1.4e-154 550.1 370 75.7
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 2.4e-154 549.3 368 73.1
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 3.2e-154 548.9 370 74.3
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 7.1e-154 547.7 370 75.1
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 9.3e-154 547.4 377 73.2
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.2e-153 547.0 308 82.8
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 1.6e-153 546.6 369 74.3
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.6e-153 546.6 311 81.7
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 2.1e-153 546.2 370 72.2
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 4.6e-153 545.0 373 71.8
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 7.8e-153 544.3 304 83.9
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 2.3e-152 542.7 370 73.8
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 3.0e-152 542.3 373 72.9
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.1e-151 540.4 373 73.2
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.1e-151 540.4 373 70.2
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.9e-151 539.7 369 72.6
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.3e-151 538.9 371 72.5
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 3.3e-151 538.9 374 72.2
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 2.1e-150 536.2 371 71.2
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 2.8e-150 535.8 371 72.8
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 3.6e-150 535.4 371 72.2
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 4.8e-150 535.0 391 69.1
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 6.2e-150 534.6 309 80.6
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 8.1e-150 534.3 369 71.0
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.4e-149 533.5 369 71.8
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 4.0e-149 531.9 359 74.1
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 1.2e-148 530.4 368 72.3
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.5e-148 530.0 387 71.3
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.0e-148 529.6 314 79.3
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.0e-148 529.6 483 59.2
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 2.0e-148 529.6 394 68.8
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 9.9e-148 527.3 368 71.7
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 9.9e-148 527.3 370 71.6
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 6.4e-147 524.6 372 71.5
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 8.4e-147 524.2 370 71.9
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.9e-146 523.1 360 71.4
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 4.2e-146 521.9 371 70.4
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 5.4e-146 521.5 371 70.4
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 5.4e-146 521.5 399 68.2
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 9.3e-146 520.8 370 70.0
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.1e-145 519.6 369 72.4
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 3.5e-145 518.8 370 70.5
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 4.6e-145 518.5 347 74.4
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 6.0e-145 518.1 369 69.6
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 6.0e-145 518.1 370 70.5
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 6.0e-145 518.1 353 71.7
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 6.0e-145 518.1 357 73.9
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 7.9e-145 517.7 369 69.4
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-144 516.9 371 69.3
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.3e-144 516.9 370 70.3
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.3e-144 516.9 370 68.1
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 1.8e-144 516.5 367 70.3
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 3.0e-144 515.8 371 70.1
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 3.9e-144 515.4 370 68.1
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 6.7e-144 514.6 366 69.9
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 6.7e-144 514.6 366 69.9
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.5e-143 513.5 370 67.3
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 1.9e-143 513.1 375 66.9
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 4.3e-143 511.9 368 70.1
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 5.6e-143 511.5 371 70.1
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 5.6e-143 511.5 369 67.2
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 5.6e-143 511.5 349 71.3
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 7.4e-143 511.1 370 68.1
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-142 510.4 371 69.8
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.8e-142 509.2 370 68.6
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 4.8e-142 508.4 368 69.6
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 1.8e-141 506.5 373 66.5
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 2.4e-141 506.1 366 69.4
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 6.9e-141 504.6 370 66.8
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 9.0e-141 504.2 372 68.5
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 4.5e-140 501.9 375 65.6
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 2.9e-139 499.2 372 65.9
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.4e-138 496.9 348 71.8
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 3.2e-138 495.7 331 75.5
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 7.1e-138 494.6 370 67.8
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 9.3e-138 494.2 369 65.0
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.6e-137 493.4 311 74.0
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 2.1e-137 493.0 321 75.4
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 4.6e-137 491.9 311 75.6
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.6e-134 483.4 323 69.0
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 5.8e-132 474.9 394 63.7
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.9e-125 451.4 328 69.8
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 3.4e-124 449.1 277 77.3
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-122 443.4 342 68.1
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 3.7e-118 429.1 332 66.6
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 3.4e-116 422.5 286 67.5
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 7.7e-116 421.4 282 69.1
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 1.4e-112 410.6 313 62.9
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 3.0e-112 409.5 287 72.1
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 8.2e-110 401.4 370 60.3
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.2e-108 397.5 285 66.0
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.7e-107 393.7 342 63.2
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.5e-107 391.7 244 74.6
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 7.0e-101 371.7 332 54.2
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 9.4e-98 361.3 290 60.0
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 2.7e-97 359.8 260 69.2
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 7.0e-93 345.1 246 63.4
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.9e-91 339.7 294 56.5
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 2.2e-86 323.6 259 65.3
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 3.1e-85 319.7 332 56.3
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 2.7e-84 316.6 288 55.2
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 7.5e-79 298.5 168 82.7
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 7.3e-74 282.0 159 81.1
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 4.1e-61 239.6 227 53.7
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.7e-59 234.2 127 84.3
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 2.6e-55 220.3 131 75.6
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.5e-50 204.5 332 42.8
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-49 200.3 147 68.0
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 6.6e-43 179.1 147 61.2
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 9.6e-42 175.3 100 78.0
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-40 171.8 147 60.5
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.3e-38 164.9 104 72.1
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 1.0e-35 155.2 147 55.1
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 5.1e-35 152.9 110 61.8
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 1.6e-33 147.9 113 69.9
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.9e-29 134.4 72 87.5
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.3e-19 101.7 64 76.6
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 2.3e-19 100.9 57 78.9
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 8.2e-17 92.4 67 62.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 8.2e-17 92.4 67 62.7
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 2.0e-15 87.8 96 57.3
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.7e-14 84.7 45 84.4
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 3.8e-14 83.6 45 84.4
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 6.5e-14 82.8 44 86.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 2.3e-11 74.3 41 75.6
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 5.1e-11 73.2 35 88.6
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 4.8e-09 66.6 61 50.8
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 8.2e-09 65.9 40 80.0
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 2.2e-06 57.8 117 28.2


User provided reference genes

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