Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.3e-112 409.8 225 100.0
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.1e-79 300.4 221 73.8
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 5.6e-71 271.6 208 76.4
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.8e-70 269.2 232 62.5
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 4.0e-69 265.4 223 62.8
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.1e-63 247.3 222 61.3
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 3.1e-61 239.2 224 59.4
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 5.8e-60 235.0 210 60.0
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.4e-58 230.3 210 58.6
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 3.0e-56 222.6 217 62.2
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.5e-55 219.5 211 61.6
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.5e-55 219.5 211 61.6
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 4.3e-55 218.8 211 60.2
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.6e-54 216.9 217 54.4
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 9.0e-53 211.1 208 55.8
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 3.4e-52 209.1 212 54.2
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.8e-52 208.4 206 61.2
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 5.8e-52 208.4 215 56.3
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.3e-51 207.2 210 54.8
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 2.2e-51 206.5 210 59.0
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 2.9e-51 206.1 214 53.7
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.9e-51 206.1 214 53.7
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 4.9e-51 205.3 212 52.8
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 8.4e-51 204.5 215 58.6
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.2e-50 202.6 218 53.2
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 5.5e-50 201.8 215 57.2
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 7.1e-50 201.4 211 57.3
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 7.1e-50 201.4 212 52.8
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.2e-49 200.7 215 57.7
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 3.5e-49 199.1 212 53.3
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.5e-49 199.1 217 52.5
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 3.5e-49 199.1 211 57.8
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 4.6e-49 198.7 216 52.3
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 4.6e-49 198.7 214 55.6
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 4.6e-49 198.7 212 52.8
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 7.9e-49 198.0 192 63.5
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.0e-48 197.6 210 57.6
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.3e-48 197.2 217 60.4
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.3e-48 197.2 212 51.9
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.8e-48 196.8 214 53.3
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.3e-48 196.4 217 56.2
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 3.9e-48 195.7 219 55.7
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.5e-47 193.0 211 53.1
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.5e-47 193.0 211 53.1
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.5e-47 193.0 217 52.1
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.5e-47 193.0 210 53.3
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 3.3e-47 192.6 224 50.0
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 3.3e-47 192.6 211 52.6
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 4.3e-47 192.2 207 50.7
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 4.3e-47 192.2 216 53.7
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.3e-47 192.2 206 52.9
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.3e-47 192.2 211 53.1
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 5.6e-47 191.8 215 55.3
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 7.4e-47 191.4 213 50.2
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 9.6e-47 191.0 210 52.4
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.3e-46 190.7 215 51.6
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.3e-46 190.7 219 50.2
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.8e-46 189.5 211 52.6
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.8e-46 188.7 194 59.3
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 6.2e-46 188.3 205 52.2
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 6.2e-46 188.3 209 52.6
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.1e-45 187.6 226 51.3
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.1e-45 187.6 211 53.1
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.4e-45 187.2 214 50.9
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.4e-45 187.2 164 61.6
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.8e-45 186.8 227 51.5
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.4e-45 186.4 212 51.4
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.4e-45 186.4 152 69.7
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 6.9e-45 184.9 212 47.2
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 6.9e-45 184.9 215 49.3
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 9.0e-45 184.5 190 57.9
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 9.0e-45 184.5 230 52.6
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.5e-44 183.7 213 49.8
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 2.0e-44 183.3 216 51.9
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 4.5e-44 182.2 211 53.6
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 7.6e-44 181.4 203 54.2
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 1.0e-43 181.0 215 51.6
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.3e-43 180.6 215 48.4
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.7e-43 180.3 210 45.7
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.7e-43 180.3 218 50.5
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.9e-43 179.5 213 48.8
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.9e-43 178.7 203 46.8
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 4.9e-43 178.7 211 46.9
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 8.4e-43 177.9 211 46.9
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 8.4e-43 177.9 217 47.9
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 8.4e-43 177.9 213 48.4
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 8.4e-43 177.9 211 47.9
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.1e-42 177.6 211 47.4
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.1e-42 177.6 204 52.9
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.1e-42 177.6 210 46.2
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.4e-42 177.2 210 44.8
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 4.2e-42 175.6 212 49.5
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 9.3e-42 174.5 214 45.3
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.1e-41 173.3 216 45.4
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.7e-41 172.9 211 48.3
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 4.6e-41 172.2 211 46.4
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 4.6e-41 172.2 211 46.4
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.3e-40 170.6 211 48.3
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.3e-40 170.6 203 46.3
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.3e-40 170.6 203 46.3
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 2.3e-40 169.9 214 45.8
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 2.3e-40 169.9 203 50.2
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 3.9e-40 169.1 217 45.2
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 3.9e-40 169.1 147 60.5
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 5.1e-40 168.7 208 53.4
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 5.1e-40 168.7 207 46.4
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.1e-39 167.5 204 50.5
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.5e-39 167.2 214 47.7
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.9e-39 166.8 219 47.0
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 3.3e-39 166.0 157 58.0
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 4.3e-39 165.6 203 46.8
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 4.8e-38 162.2 204 45.6
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 8.2e-38 161.4 211 46.4
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.4e-37 159.8 212 43.4
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 2.0e-36 156.8 183 50.8
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 4.5e-36 155.6 154 59.7
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 6.5e-35 151.8 219 47.9
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.3e-32 143.3 143 60.8
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 3.0e-32 142.9 199 45.2
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 5.1e-32 142.1 230 42.2
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 9.7e-31 137.9 200 45.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.2e-30 136.7 218 36.2
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.7e-30 136.0 191 44.5
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 3.7e-30 136.0 223 43.9
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 3.1e-29 132.9 167 44.9
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 6.9e-29 131.7 80 72.5
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.5e-28 130.6 142 50.7
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.4e-28 129.4 219 39.3
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.0e-27 127.9 141 46.1
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 5.0e-27 125.6 209 37.3
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 5.0e-27 125.6 141 41.8
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.4e-26 124.0 115 53.0
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 3.6e-25 119.4 122 45.1
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.5e-23 114.0 135 45.9
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.3e-22 110.9 97 56.7
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 2.8e-22 109.8 108 60.2
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 3.7e-22 109.4 178 44.9
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 6.3e-22 108.6 218 37.6
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.8e-21 107.1 82 51.2
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 3.1e-21 106.3 107 46.7
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 6.9e-21 105.1 86 53.5
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 7.7e-20 101.7 86 47.7
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.0e-19 101.3 141 41.8
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.0e-19 101.3 146 37.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 3.8e-19 99.4 88 56.8
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.2e-18 95.9 127 49.6
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 7.2e-18 95.1 127 49.6
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.7e-17 93.2 86 48.8
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.1e-17 92.0 86 47.7
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.1e-16 89.0 83 45.8
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 3.1e-13 79.7 106 41.5
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.2e-12 77.8 194 38.7
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.0e-11 74.7 116 47.4
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 3.8e-11 72.8 120 44.2
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.7e-09 66.6 119 41.2


User provided reference genes

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