Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 3.4e-74 281.6 143 100.0
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 4.7e-39 164.9 142 64.1
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 8.0e-39 164.1 143 65.7
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 2.0e-37 159.5 143 60.1
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 2.6e-37 159.1 143 62.9
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 2.6e-37 159.1 139 62.6
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 1.1e-35 153.7 147 59.9
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 2.4e-35 152.5 133 63.2
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 5.0e-33 144.8 147 57.1
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 2.1e-31 139.4 156 55.8
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 2.1e-31 139.4 148 58.8
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 4.7e-31 138.3 148 60.8
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 7.5e-29 131.0 156 53.8
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 7.5e-29 131.0 145 55.2
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 8.3e-28 127.5 156 52.6
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.8e-27 126.3 145 55.2
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.8e-27 126.3 142 51.4
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.8e-27 126.3 142 50.7
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 9.2e-27 124.0 156 51.9
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 3.5e-26 122.1 156 51.3
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 3.5e-26 122.1 157 51.6
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 3.0e-25 119.0 156 52.6
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.0e-25 119.0 156 51.3
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 1.5e-24 116.7 143 49.0
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.9e-24 116.3 142 54.9
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 7.3e-24 114.4 144 52.8
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 7.3e-24 114.4 145 53.1
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 1.6e-23 113.2 137 54.7
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 4.7e-23 111.7 145 50.3
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 6.2e-23 111.3 143 46.2
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 1.1e-22 110.5 145 51.0
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 3.1e-22 109.0 143 51.7
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 3.1e-22 109.0 143 51.7
unitig_578.g15702 Utricularia gibba HOM05D004206 ORTHO05D003325 2.0e-21 106.3 93 66.7
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 9.8e-21 104.0 132 50.8
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 1.3e-20 103.6 148 49.3
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.7e-20 103.2 142 48.6
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.7e-20 103.2 145 46.9
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 1.7e-20 103.2 140 45.7
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.9e-20 102.4 143 45.5
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.9e-20 102.4 143 45.5
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 2.9e-20 102.4 145 49.7
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 3.7e-20 102.1 144 46.5
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 8.3e-20 100.9 142 48.6
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 8.3e-20 100.9 152 49.3
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 1.1e-19 100.5 156 48.1
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 1.9e-19 99.8 148 49.3
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 2.4e-19 99.4 145 49.0
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 3.2e-19 99.0 143 47.6
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 3.2e-19 99.0 144 43.8
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 4.1e-19 98.6 130 49.2
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 7.0e-19 97.8 142 45.8
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 9.2e-19 97.4 144 43.1
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.6e-18 96.7 145 44.8
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 2.7e-18 95.9 131 48.1
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.7e-18 95.9 142 44.4
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 2.7e-18 95.9 147 47.6
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 2.7e-18 95.9 144 47.9
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 4.6e-18 95.1 142 49.3
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 6.0e-18 94.7 143 46.9
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 7.8e-18 94.4 63 79.4
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 1.3e-17 93.6 148 47.3
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.3e-17 93.6 143 48.3
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.3e-17 93.6 142 44.4
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.7e-17 93.2 143 46.9
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.7e-17 93.2 143 46.9
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 2.3e-17 92.8 143 46.9
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 2.3e-17 92.8 144 42.4
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 2.3e-17 92.8 144 42.4
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 6.6e-17 91.3 82 65.9
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 6.6e-17 91.3 149 45.6
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 6.6e-17 91.3 143 46.2
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 1.5e-16 90.1 129 48.1
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 1.5e-16 90.1 142 45.1
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.9e-16 89.7 148 46.6
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 4.3e-16 88.6 145 46.2
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 4.3e-16 88.6 146 45.2
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 5.6e-16 88.2 140 45.7
Hma1.2p1_1535F.1_g289470 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 7.3e-16 87.8 136 43.4
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 9.5e-16 87.4 145 46.2
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 1.2e-15 87.0 147 43.5
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.6e-15 86.7 141 44.7
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 2.1e-15 86.3 144 44.4
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 2.8e-15 85.9 140 42.1
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 3.6e-15 85.5 149 43.0
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 6.2e-15 84.7 144 43.1
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 6.2e-15 84.7 144 43.1
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 6.2e-15 84.7 140 42.9
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 1.1e-14 84.0 140 40.7
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 1.8e-14 83.2 163 39.9
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 1.8e-14 83.2 141 44.0
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 6.8e-14 81.3 141 43.3
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 1.2e-13 80.5 140 41.4
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 2.0e-13 79.7 139 40.3
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 3.4e-13 79.0 143 40.6
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 4.4e-13 78.6 140 40.0
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 7.5e-13 77.8 136 44.9
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 9.9e-13 77.4 142 38.7
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 9.9e-13 77.4 142 38.7
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 9.9e-13 77.4 143 44.1
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 9.9e-13 77.4 158 39.9
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 1.3e-12 77.0 90 53.3
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 1.7e-12 76.6 142 40.8
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 1.7e-12 76.6 157 45.2
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 2.2e-12 76.3 106 53.8
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.9e-12 75.9 140 38.6
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 2.9e-12 75.9 141 39.0
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 2.9e-12 75.9 157 42.7
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.1e-11 73.9 144 38.9
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 1.1e-11 73.9 140 39.3
TAR636G0761 Trochodendron aralioides HOM05D004206 ORTHO05D003325 1.1e-11 73.9 136 39.7
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.9e-11 73.2 144 38.2
Nn2g12918 Nelumbo nucifera HOM05D004206 ORTHO05D003325 1.9e-11 73.2 128 41.4
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 2.4e-11 72.8 141 41.1
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 2.4e-11 72.8 73 61.6
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.6e-10 70.1 82 59.8
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 3.5e-10 68.9 45 73.3
Lsat_1_v5_gn_1_55700 Lactuca sativa HOM05D004206 ORTHO05D003325 7.8e-10 67.8 82 56.1
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 1.7e-09 66.6 142 40.1
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 2.3e-09 66.2 89 50.6
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 2.3e-09 66.2 150 38.0
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 5.1e-09 65.1 151 35.1
Hma1.2p1_1004F.1_g246870 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 8.6e-09 64.3 46 67.4
Zm00001eb266560 Zea mays HOM05D019293 ORTHO05D003325 1.5e-08 63.5 155 36.1
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 2.5e-08 62.8 41 73.2
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 4.3e-08 62.0 81 49.4
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 4.3e-08 62.0 148 33.8
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 4.3e-08 62.0 145 35.9
vmacro03102 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 4.3e-08 62.0 82 52.4
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 5.6e-08 61.6 141 36.2
HanXRQChr14g0459281 Helianthus annuus HOM05D004206 ORTHO05D003325 1.2e-07 60.5 48 62.5
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 1.6e-07 60.1 72 50.0
CSS0031426 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D000289 2.1e-07 59.7 88 53.4
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 2.8e-07 59.3 142 35.9
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 3.6e-07 58.9 89 47.2
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 4.7e-07 58.5 47 63.8
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 6.2e-07 58.2 126 42.1
PSO648G0001 Papaver somniferum HOM05D004206 ORTHO05D003325 6.2e-07 58.2 41 65.9
Os05g0113500 Oryza sativa ssp. japonica HOM05D004206 ORTHO05D003325 8.1e-07 57.8 151 33.1
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 8.1e-07 57.8 77 53.2
SalBow8G2190 Salvia bowleyana HOM05D004206 ORTHO05D003325 8.1e-07 57.8 65 49.2
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.1e-06 57.4 39 69.2
PSO339G1969 Papaver somniferum HOM05D004206 ORTHO05D003325 1.1e-06 57.4 41 65.9
MSTRG.7417 Avicennia marina HOM05D004206 ORTHO05D003325 1.4e-06 57.0 111 42.3
HanXRQChr11g0349321 Helianthus annuus HOM05D004206 ORTHO05D003325 1.4e-06 57.0 47 66.0
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 1.8e-06 56.6 92 47.8
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 1.8e-06 56.6 90 43.3
BcaC02g11856 Brassica carinata HOM05D008508 ORTHO05D003325 4.0e-06 55.5 52 51.9
C04p10560 Brassica napus HOM05D008508 ORTHO05D003325 4.0e-06 55.5 52 51.9
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 4.0e-06 55.5 52 51.9
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 4.0e-06 55.5 138 33.3
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 5.2e-06 55.1 78 51.3
BcaB01g03773 Brassica carinata HOM05D008508 ORTHO05D003325 5.2e-06 55.1 82 45.1
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 6.8e-06 54.7 57 54.4
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 8.9e-06 54.3 170 34.1
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 8.9e-06 54.3 62 48.4
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 8.9e-06 54.3 49 55.1
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 8.9e-06 54.3 49 55.1
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 8.9e-06 54.3 49 55.1
BolC8t50501H Brassica oleracea HOM05D008508 ORTHO05D003325 8.9e-06 54.3 49 55.1


User provided reference genes

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