Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5578 Avicennia marina HOM05D007005 ORTHO05D008799 1.6e-85 319.3 158 100.0
Migut.J00176 Erythranthe guttata HOM05D007005 ORTHO05D008799 9.8e-30 134.0 102 66.7
SGA_v2.0_scaffold85G26741 Striga asiatica HOM05D007005 ORTHO05D008799 9.2e-28 127.5 102 62.7
unitig_8.g3230 Utricularia gibba HOM05D007005 ORTHO05D008799 1.3e-26 123.6 102 61.8
Oeu064505.1 Olea europaea HOM05D007005 ORTHO05D008799 1.7e-26 123.2 102 61.8
CAN.G5.36 Capsicum annuum HOM05D007005 ORTHO05D008799 5.0e-26 121.7 120 55.0
Solyc09g005230.3 Solanum lycopersicum HOM05D007005 ORTHO05D008799 3.6e-24 115.5 96 62.5
TAR623G0543 Trochodendron aralioides HOM05D007005 ORTHO05D008799 6.2e-24 114.8 138 47.1
PGSC0003DMG400011791 Solanum tuberosum HOM05D007005 ORTHO05D008799 8.0e-24 114.4 96 62.5
Nitab4.5_0000335g0230 Nicotiana tabacum HOM05D007005 ORTHO05D008799 2.3e-23 112.8 93 64.5
Peaxi162Scf00141g00921 Petunia axillaris HOM05D007005 ORTHO05D008799 4.0e-23 112.1 101 57.4
Nitab4.5_0000511g0110 Nicotiana tabacum HOM05D007005 ORTHO05D008799 5.2e-23 111.7 96 61.5
Dinv23100 Davidia involucrata HOM05D007005 ORTHO05D008799 6.8e-23 111.3 124 48.4
Duzib093G0110 Durio zibethinus HOM05D007005 ORTHO05D008799 1.5e-22 110.2 147 41.5
Sopen09g001210 Solanum pennellii HOM05D007005 ORTHO05D008799 1.5e-22 110.2 96 60.4
ClCG04G007040 Citrullus lanatus HOM05D007005 ORTHO05D008799 9.8e-22 107.5 140 44.3
Ciclev10013484m.g Citrus clementina HOM05D007005 ORTHO05D008799 9.8e-22 107.5 102 56.9
FAN14G1027 Fragaria x ananassa HOM05D007005 ORTHO05D008799 1.3e-21 107.1 95 57.9
FAN14G1400 Fragaria x ananassa HOM05D007005 ORTHO05D008799 1.3e-21 107.1 95 57.9
MELO3C003296.2 Cucumis melo HOM05D007005 ORTHO05D008799 2.2e-21 106.3 144 43.8
FvH4_6g11500 Fragaria vesca HOM05D007005 ORTHO05D008799 2.9e-21 105.9 95 56.8
FAN05G3292 Fragaria x ananassa HOM05D007005 ORTHO05D008799 2.9e-21 105.9 95 57.9
FAN05G3789 Fragaria x ananassa HOM05D007005 ORTHO05D008799 2.9e-21 105.9 95 57.9
Nn2g11475 Nelumbo nucifera HOM05D007005 ORTHO05D008799 2.9e-21 105.9 101 51.5
FAN09G3623 Fragaria x ananassa HOM05D007005 ORTHO05D008799 3.7e-21 105.5 95 57.9
vmacro20260 Vaccinium macrocarpon HOM05D007005 ORTHO05D008799 4.9e-21 105.1 95 57.9
GSVIVG01033964001 Vitis vinifera HOM05D007005 ORTHO05D008799 4.9e-21 105.1 147 41.5
Atru.chr8.2235 Acer truncatum HOM05D007005 ORTHO05D008799 8.3e-21 104.4 96 58.3
CsaV3_4G026230 Cucumis sativus L. HOM05D007005 ORTHO05D008799 8.3e-21 104.4 133 44.4
Prupe.6G276600 Prunus persica HOM05D007005 ORTHO05D008799 1.4e-20 103.6 95 56.8
CiPaw.09G208900 Carya illinoinensis HOM05D007005 ORTHO05D008799 1.9e-20 103.2 96 57.3
Thecc.05G016700 Theobroma cacao HOM05D007005 ORTHO05D008799 1.9e-20 103.2 94 54.3
Gohir.A04G089800 Gossypium hirsutum HOM05D007005 ORTHO05D008799 2.4e-20 102.8 92 57.6
QL07p035783 Quercus lobata HOM05D007005 ORTHO05D008799 2.4e-20 102.8 96 56.2
CDE02G1196 Ceratophyllum demersum HOM05D007005 ORTHO05D008799 3.2e-20 102.4 148 38.5
Cc06_g01420 Coffea canephora HOM05D007005 ORTHO05D008799 3.2e-20 102.4 132 44.7
RcHm_v2.0_Chr3g0463211 Rosa chinensis HOM05D007005 ORTHO05D008799 3.2e-20 102.4 102 52.9
Migut.J00177 Erythranthe guttata HOM05D007005 ORTHO05D008799 5.4e-20 101.7 62 74.2
Ca_07634_v3 Cicer arietinum L. HOM05D007005 ORTHO05D008799 7.0e-20 101.3 101 54.5
Gohir.D04G129900 Gossypium hirsutum HOM05D007005 ORTHO05D008799 7.0e-20 101.3 92 56.5
Gorai.012G113400 Gossypium raimondii HOM05D007005 ORTHO05D008799 7.0e-20 101.3 92 56.5
Lalb_Chr19g0124501 Lupinus albus HOM05D007005 ORTHO05D008799 1.6e-19 100.1 147 40.8
Glyma.07G149300 Glycine max HOM05D007005 ORTHO05D008799 2.0e-19 99.8 101 51.5
HanXRQChr11g0331611 Helianthus annuus HOM05D007005 ORTHO05D008799 2.7e-19 99.4 102 53.9
Lj1g0008116 Lotus japonicus HOM05D007005 ORTHO05D008799 2.7e-19 99.4 91 58.2
Potri.006G099700 Populus trichocarpa HOM05D007005 ORTHO05D008799 2.7e-19 99.4 96 54.2
Psat3g129840 Pisum sativum HOM05D007005 ORTHO05D008799 3.5e-19 99.0 103 50.5
Sed0008022 Sechium edule HOM05D007005 ORTHO05D008799 6.0e-19 98.2 91 56.0
Lsat_1_v5_gn_8_102220 Lactuca sativa HOM05D007005 ORTHO05D008799 7.8e-19 97.8 102 50.0
TWI77G0287 Tripterygium wilfordii HOM05D007005 ORTHO05D008799 1.7e-18 96.7 143 39.9
VMungo1383G2262 Vigna mungo HOM05D007005 ORTHO05D008799 2.3e-18 96.3 147 38.1
BcaB01g06231 Brassica carinata HOM05D007005 ORTHO05D008799 3.9e-18 95.5 98 51.0
Phvul.008G104800 Phaseolus vulgaris HOM05D007005 ORTHO05D008799 3.9e-18 95.5 91 54.9
SalBow5G0518 Salvia bowleyana HOM05D007005 ORTHO05D008799 5.0e-18 95.1 120 45.8
CARHR211870 Cardamine hirsuta HOM05D007005 ORTHO05D008799 6.6e-18 94.7 133 41.4
Medtr7g068310 Medicago truncatula HOM05D007005 ORTHO05D008799 6.6e-18 94.7 101 50.5
PSO339G1757 Papaver somniferum HOM05D007005 ORTHO05D008799 6.6e-18 94.7 95 53.7
Hund11018 Selenicereus undatus HOM05D007005 ORTHO05D008799 6.6e-18 94.7 101 46.5
Carub.0006s0032 Capsella rubella HOM05D007005 ORTHO05D008799 8.6e-18 94.4 131 42.7
Rhsim05G0214600 Rhododendron simsii HOM05D007005 ORTHO05D008799 8.6e-18 94.4 92 54.3
Sabra06G0076600 Salix brachista HOM05D007005 ORTHO05D008799 1.1e-17 94.0 96 52.1
HPP92_005562 Vanilla planifolia HOM05D007005 ORTHO05D008799 1.1e-17 94.0 102 48.0
AUR62010465 Chenopodium quinoa HOM05D007005 ORTHO05D008799 1.5e-17 93.6 101 49.5
Sc01g0006480 Simmondsia chinensis HOM05D007005 ORTHO05D008799 1.5e-17 93.6 91 52.7
Aa31LG1G23130 Aethionema arabicum HOM05D007005 ORTHO05D008799 1.9e-17 93.2 85 55.3
AT5G01510 Arabidopsis thaliana HOM05D007005 ORTHO05D008799 1.9e-17 93.2 87 54.0
ECA236G2421 Erigeron canadensis HOM05D007005 ORTHO05D008799 1.9e-17 93.2 102 50.0
Thhalv10013293m.g Eutrema salsugineum HOM05D007005 ORTHO05D008799 1.9e-17 93.2 144 41.0
Sp6g40790 Schrenkiella parvula HOM05D007005 ORTHO05D008799 2.5e-17 92.8 98 50.0
EL10Ac5g12569 Beta vulgaris HOM05D007005 ORTHO05D008799 7.3e-17 91.3 104 46.2
A03p00280 Brassica napus HOM05D007005 ORTHO05D008799 9.5e-17 90.9 98 48.0
BraA03t09419Z Brassica rapa HOM05D007005 ORTHO05D008799 9.5e-17 90.9 98 48.0
BcaB01g06100 Brassica carinata HOM05D007005 ORTHO05D008799 1.2e-16 90.5 98 49.0
C03p00450 Brassica napus HOM05D007005 ORTHO05D008799 1.2e-16 90.5 98 49.0
BolC3t12610H Brassica oleracea HOM05D007005 ORTHO05D008799 1.2e-16 90.5 98 49.0
PSO384G0643 Papaver somniferum HOM05D007005 ORTHO05D008799 1.6e-16 90.1 95 51.6
AUR62030448 Chenopodium quinoa HOM05D007005 ORTHO05D008799 2.1e-16 89.7 101 47.5
MBI14_g31684_MAGBIO Magnolia biondii HOM05D007005 ORTHO05D008799 2.1e-16 89.7 134 41.8
THA.LOC104823299 Tarenaya hassleriana HOM05D007005 ORTHO05D008799 2.8e-16 89.4 89 53.9
AL6G10540 Arabidopsis lyrata HOM05D007005 ORTHO05D008799 8.1e-16 87.8 85 54.1
Glyma.07G149032 Glycine max HOM05D007005 ORTHO05D008799 8.9e-15 84.3 93 49.5
Ah.02g115880 Amaranthus hybridus HOM05D007005 ORTHO05D008799 2.6e-14 82.8 91 47.3
Haze_20998 Corylus avellana HOM05D007005 ORTHO05D008799 9.8e-14 80.9 94 51.1
ATR0618G035 Amborella trichopoda HOM05D007005 ORTHO05D008799 3.2e-12 75.9 87 48.3
DCAR_015423 Daucus carota HOM05D007005 ORTHO05D008799 1.6e-11 73.6 61 55.7
SEGI_37921 Sequoiadendron giganteum HOM05D007005 ORTHO05D008799 6.0e-11 71.6 91 44.0
SEGI_37959 Sequoiadendron giganteum HOM05D007005 ORTHO05D008799 6.0e-11 71.6 91 44.0
Glyma.18G200200 Glycine max HOM05D007005 ORTHO05D008799 7.3e-09 64.7 101 39.6
COL.COLO4_14541 Corchorus olitorius HOM05D007005 ORTHO05D004733 1.8e-07 60.1 60 56.7
Manes.09G104000 Manihot esculenta HOM05D007005 ORTHO05D008799 6.8e-07 58.2 60 56.7
SMO367G1276 Selaginella moellendorffii HOM05D007005 ORTHO05D008799 5.8e-06 55.1 92 30.4


User provided reference genes

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