Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5468 Avicennia marina HOM05D003235 ORTHO05D017489 7.7e-61 236.9 113 100.0
SalBow5G2197 Salvia bowleyana HOM05D003235 ORTHO05D003863 1.3e-20 103.2 68 76.5
SalBow5G2974 Salvia bowleyana HOM05D003235 ORTHO05D003863 1.3e-20 103.2 68 76.5
SGA_v2.0_scaffold98G29294 Striga asiatica HOM05D003235 ORTHO05D003863 8.6e-20 100.5 55 89.1
CSS0024694 Camellia sinensis var. sinensis HOM05D003235 ORTHO05D003863 1.1e-19 100.1 55 89.1
MSTRG.27622 Avicennia marina HOM05D003235 ORTHO05D003863 1.5e-19 99.8 55 89.1
Actinidia32018 Actinidia chinensis HOM05D003235 ORTHO05D003863 1.9e-19 99.4 55 87.3
Dinv14158 Davidia involucrata HOM05D003235 ORTHO05D003863 4.3e-19 98.2 55 85.5
vmacro09726 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 4.3e-19 98.2 55 85.5
Cc09_g10610 Coffea canephora HOM05D003235 ORTHO05D003863 7.3e-19 97.4 55 85.5
Migut.N01350 Erythranthe guttata HOM05D003235 ORTHO05D003863 7.3e-19 97.4 55 85.5
Manes.11G106900 Manihot esculenta HOM05D003235 ORTHO05D003863 1.6e-18 96.3 55 87.3
SGA_v2.0_scaffold80G25821 Striga asiatica HOM05D003235 ORTHO05D003863 1.6e-18 96.3 55 83.6
unitig_749.g13984 Utricularia gibba HOM05D003235 ORTHO05D003863 2.1e-18 95.9 55 85.5
Cc08_g00700 Coffea canephora HOM05D003235 ORTHO05D003863 2.8e-18 95.5 55 85.5
Nitab4.5_0000783g0290 Nicotiana tabacum HOM05D003235 ORTHO05D003863 3.6e-18 95.1 55 81.8
Nitab4.5_0006796g0050 Nicotiana tabacum HOM05D003235 ORTHO05D003863 3.6e-18 95.1 55 81.8
PGR142G4436 Punica granatum HOM05D003235 ORTHO05D003863 4.7e-18 94.7 55 87.3
vmacro20582 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 4.7e-18 94.7 55 85.5
Cpa.g.sc20.187 Carica papaya HOM05D003235 ORTHO05D003863 1.4e-17 93.2 55 87.3
Solyc08g082340.3 Solanum lycopersicum HOM05D003235 ORTHO05D003863 1.8e-17 92.8 55 78.2
Sopen08g030600 Solanum pennellii HOM05D003235 ORTHO05D003863 1.8e-17 92.8 55 78.2
PGSC0003DMG400012284 Solanum tuberosum HOM05D003235 ORTHO05D003863 1.8e-17 92.8 55 78.2
Actinidia20561 Actinidia chinensis HOM05D003235 ORTHO05D003863 2.3e-17 92.4 55 85.5
Gohir.A04G125200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 2.3e-17 92.4 55 85.5
Gohir.D04G170000 Gossypium hirsutum HOM05D003235 ORTHO05D003863 2.3e-17 92.4 55 85.5
Gorai.012G158300 Gossypium raimondii HOM05D003235 ORTHO05D003863 2.3e-17 92.4 55 85.5
Prupe.8G176600 Prunus persica HOM05D003235 ORTHO05D003863 2.3e-17 92.4 56 82.1
Lj9A405T66 Lonicera japonica HOM05D003235 ORTHO05D003863 3.1e-17 92.0 55 83.6
Rhsim11G0196500 Rhododendron simsii HOM05D003235 ORTHO05D003863 3.1e-17 92.0 55 81.8
MD10G1138100 Malus domestica HOM05D003235 ORTHO05D003863 4.0e-17 91.7 56 80.4
GSVIVG01023935001 Vitis vinifera HOM05D003235 ORTHO05D003863 5.2e-17 91.3 53 83.0
Manes.04G065100 Manihot esculenta HOM05D003235 ORTHO05D003863 6.8e-17 90.9 54 87.0
Potri.004G183300 Populus trichocarpa HOM05D003235 ORTHO05D003863 6.8e-17 90.9 55 85.5
Rhsim05G0048800 Rhododendron simsii HOM05D003235 ORTHO05D003863 6.8e-17 90.9 55 80.0
THA.LOC104807394 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 6.8e-17 90.9 55 85.5
HanXRQChr11g0335221 Helianthus annuus HOM05D003235 ORTHO05D003863 8.9e-17 90.5 55 81.8
CAN.G1235.15 Capsicum annuum HOM05D003235 ORTHO05D003863 1.2e-16 90.1 55 76.4
Lsat_1_v5_gn_7_116021 Lactuca sativa HOM05D003235 ORTHO05D003863 1.2e-16 90.1 55 80.0
Lalb_Chr15g0083901 Lupinus albus HOM05D003235 ORTHO05D003863 1.2e-16 90.1 56 80.4
COL.COLO4_17945 Corchorus olitorius HOM05D003235 ORTHO05D003863 1.5e-16 89.7 55 83.6
COL.COLO4_24688 Corchorus olitorius HOM05D003235 ORTHO05D003863 1.5e-16 89.7 55 83.6
Duzib248G1500 Durio zibethinus HOM05D003235 ORTHO05D003863 1.5e-16 89.7 55 83.6
Potri.009G143200 Populus trichocarpa HOM05D003235 ORTHO05D003863 1.5e-16 89.7 55 85.5
THA.LOC104819684 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 1.5e-16 89.7 55 83.6
Actinidia18009 Actinidia chinensis HOM05D003235 ORTHO05D003863 2.0e-16 89.4 58 79.3
CiPaw.06G117700 Carya illinoinensis HOM05D003235 ORTHO05D003863 2.0e-16 89.4 53 83.0
ClCG02G003570 Citrullus lanatus HOM05D003235 ORTHO05D003863 2.0e-16 89.4 53 88.7
Ciclev10028672m.g Citrus clementina HOM05D003235 ORTHO05D003863 2.6e-16 89.0 85 61.2
Lalb_Chr20g0114201 Lupinus albus HOM05D003235 ORTHO05D003863 7.5e-16 87.4 56 76.8
Lj6g0023552 Lotus japonicus HOM05D003235 ORTHO05D003863 9.8e-16 87.0 56 78.6
MD00G1083900 Malus domestica HOM05D003235 ORTHO05D003863 9.8e-16 87.0 56 76.8
Sp6g22200 Schrenkiella parvula HOM05D003235 ORTHO05D003863 9.8e-16 87.0 55 83.6
Thecc.02G046900 Theobroma cacao HOM05D003235 ORTHO05D003863 9.8e-16 87.0 55 81.8
TWI79G1341 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 9.8e-16 87.0 55 81.8
arahy.Tifrunner.gnm1.ann1.5A4VTA Arachis hypogaea HOM05D003235 ORTHO05D003863 1.3e-15 86.7 56 78.6
arahy.Tifrunner.gnm1.ann1.MB0JZI Arachis hypogaea HOM05D003235 ORTHO05D003863 1.3e-15 86.7 56 78.6
CiPaw.05G089800 Carya illinoinensis HOM05D003235 ORTHO05D003863 1.3e-15 86.7 54 81.5
AUR62027140 Chenopodium quinoa HOM05D003235 ORTHO05D003863 2.2e-15 85.9 65 69.2
Sp7g33030 Schrenkiella parvula HOM05D003235 ORTHO05D003863 2.2e-15 85.9 55 83.6
TWI31G0863 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 2.2e-15 85.9 55 81.8
Ah.01g007750 Amaranthus hybridus HOM05D003235 ORTHO05D003863 2.9e-15 85.5 52 76.9
Ah.01g023630 Amaranthus hybridus HOM05D003235 ORTHO05D003863 2.9e-15 85.5 52 76.9
BcaNung00616 Brassica carinata HOM05D003235 ORTHO05D003863 2.9e-15 85.5 55 81.8
Hund17321 Selenicereus undatus HOM05D003235 ORTHO05D003863 2.9e-15 85.5 54 79.6
AL8G37210 Arabidopsis lyrata HOM05D003235 ORTHO05D003863 4.9e-15 84.7 55 81.8
BcaNung00615 Brassica carinata HOM05D003235 ORTHO05D003863 4.9e-15 84.7 55 80.0
A01p03310 Brassica napus HOM05D003235 ORTHO05D003863 4.9e-15 84.7 55 80.0
C01p03650 Brassica napus HOM05D003235 ORTHO05D003863 4.9e-15 84.7 55 80.0
BolC1t00356H Brassica oleracea HOM05D003235 ORTHO05D003863 4.9e-15 84.7 55 80.0
BraA01t00316Z Brassica rapa HOM05D003235 ORTHO05D003863 4.9e-15 84.7 55 80.0
CAN.G1804.1 Capsicum annuum HOM05D003235 ORTHO05D003863 4.9e-15 84.7 55 72.7
MELO3C013265.2 Cucumis melo HOM05D003235 ORTHO05D003863 4.9e-15 84.7 53 84.9
FvH4_2g16380 Fragaria vesca HOM05D003235 ORTHO05D003863 4.9e-15 84.7 56 75.0
FAN15G0986 Fragaria x ananassa HOM05D003235 ORTHO05D003863 4.9e-15 84.7 56 75.0
FAN24G0538 Fragaria x ananassa HOM05D003235 ORTHO05D003863 4.9e-15 84.7 56 75.0
FAN24G1371 Fragaria x ananassa HOM05D003235 ORTHO05D003863 4.9e-15 84.7 56 75.0
FAN27G1339 Fragaria x ananassa HOM05D003235 ORTHO05D003863 4.9e-15 84.7 56 75.0
Carub.0008s2130 Capsella rubella HOM05D003235 ORTHO05D003863 8.3e-15 84.0 55 80.0
Ca_02021_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 8.3e-15 84.0 56 76.8
Haze_02042 Corylus avellana HOM05D003235 ORTHO05D003863 8.3e-15 84.0 54 81.5
Sabra09G0111000 Salix brachista HOM05D003235 ORTHO05D003863 8.3e-15 84.0 55 81.8
Sed0009233 Sechium edule HOM05D003235 ORTHO05D003863 8.3e-15 84.0 53 84.9
TPR.G31486 Trifolium pratense HOM05D003235 ORTHO05D003863 8.3e-15 84.0 56 76.8
AT5G60620 Arabidopsis thaliana HOM05D003235 ORTHO05D003863 1.1e-14 83.6 55 80.0
CsaV3_7G001740 Cucumis sativus L. HOM05D003235 ORTHO05D003863 1.1e-14 83.6 53 83.0
ECA233G5747 Erigeron canadensis HOM05D003235 ORTHO05D003863 1.1e-14 83.6 55 78.2
Medtr2g438210 Medicago truncatula HOM05D003235 ORTHO05D003863 1.1e-14 83.6 56 76.8
Medtr4g127910 Medicago truncatula HOM05D003235 ORTHO05D003863 1.1e-14 83.6 56 76.8
RcHm_v2.0_Chr6g0280151 Rosa chinensis HOM05D003235 ORTHO05D003863 1.1e-14 83.6 56 75.0
VMungo1215G3112 Vigna mungo HOM05D003235 ORTHO05D003863 1.1e-14 83.6 56 75.0
Ca_25919_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 1.4e-14 83.2 56 75.0
FvH4_5g27680 Fragaria vesca HOM05D003235 ORTHO05D003863 1.4e-14 83.2 57 77.2
Psat1g147800 Pisum sativum HOM05D003235 ORTHO05D017489 1.4e-14 83.2 56 76.8
AUR62012940 Chenopodium quinoa HOM05D003235 ORTHO05D003863 1.9e-14 82.8 65 67.7
Sc14g0002390 Simmondsia chinensis HOM05D003235 ORTHO05D003863 1.9e-14 82.8 54 75.9
TPR.G30239 Trifolium pratense HOM05D003235 ORTHO05D017489 1.9e-14 82.8 56 76.8
CANSAT11G0145 Cannabis sativa HOM05D003235 ORTHO05D003863 2.4e-14 82.4 56 82.1
Peaxi162Scf00362g00250 Petunia axillaris HOM05D003235 ORTHO05D003863 2.4e-14 82.4 52 78.8
Thhalv10013846m.g Eutrema salsugineum HOM05D003235 ORTHO05D003863 3.2e-14 82.0 55 80.0
Gohir.D02G230900 Gossypium hirsutum HOM05D003235 ORTHO05D003863 4.1e-14 81.6 55 80.0
Gorai.005G258500 Gossypium raimondii HOM05D003235 ORTHO05D003863 4.1e-14 81.6 55 80.0
Phvul.003G022900 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 4.1e-14 81.6 56 75.0
CARHR274300 Cardamine hirsuta HOM05D003235 ORTHO05D003863 5.4e-14 81.3 55 78.2
Eucgr.I01507 Eucalyptus grandis HOM05D003235 ORTHO05D003863 5.4e-14 81.3 84 58.3
Sed0003744 Sechium edule HOM05D003235 ORTHO05D003863 7.0e-14 80.9 54 79.6
EL10Ac9g21270 Beta vulgaris HOM05D003235 ORTHO05D003863 9.2e-14 80.5 55 74.5
Glyma.09G119200 Glycine max HOM05D003235 ORTHO05D003863 9.2e-14 80.5 56 75.0
Nn1g03654 Nelumbo nucifera HOM05D003235 ORTHO05D003863 9.2e-14 80.5 55 69.1
VMungo0251G0657 Vigna mungo HOM05D003235 ORTHO05D003863 9.2e-14 80.5 56 75.0
Aa31LG2G14790 Aethionema arabicum HOM05D003235 ORTHO05D003863 1.2e-13 80.1 55 76.4
ECA236G3279 Erigeron canadensis HOM05D003235 ORTHO05D003863 1.2e-13 80.1 56 75.0
FAN04G0585 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.2e-13 80.1 57 73.7
Lsat_1_v5_gn_8_120260 Lactuca sativa HOM05D003235 ORTHO05D003863 1.2e-13 80.1 53 77.4
Phvul.002G192600 Phaseolus vulgaris HOM05D003235 ORTHO05D017489 1.2e-13 80.1 63 66.7
Gohir.A03G209200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 1.6e-13 79.7 55 78.2
Hund00347 Selenicereus undatus HOM05D003235 ORTHO05D003863 2.7e-13 79.0 46 84.8
HanXRQChr14g0458991 Helianthus annuus HOM05D003235 ORTHO05D003863 3.5e-13 78.6 46 84.8
vmacro02322 Vaccinium macrocarpon HOM05D003235 ORTHO05D017489 3.5e-13 78.6 55 72.7
PSO675G5274 Papaver somniferum HOM05D003235 ORTHO05D003863 6.0e-13 77.8 53 67.9
arahy.Tifrunner.gnm1.ann1.0G9KRE Arachis hypogaea HOM05D003235 ORTHO05D003863 1.0e-12 77.0 82 54.9
arahy.Tifrunner.gnm1.ann1.S5QGNM Arachis hypogaea HOM05D003235 ORTHO05D003863 1.0e-12 77.0 82 54.9
EL10Ac3g05050 Beta vulgaris HOM05D003235 ORTHO05D003863 1.0e-12 77.0 55 72.7
SHI05840 Sapria himalayana HOM05D003235 ORTHO05D017489 1.0e-12 77.0 61 67.2
QL11p054430 Quercus lobata HOM05D003235 ORTHO05D003863 2.3e-12 75.9 44 86.4
Phvul.002G191600 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 3.0e-12 75.5 55 72.7
PSO541G0846 Papaver somniferum HOM05D003235 ORTHO05D003863 6.6e-12 74.3 53 66.0
QL11p054583 Quercus lobata HOM05D003235 ORTHO05D003863 8.6e-12 73.9 43 86.0
CDE11G0005 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.9e-11 72.8 64 59.4
TAR627G1023 Trochodendron aralioides HOM05D003235 ORTHO05D003863 7.3e-11 70.9 45 77.8
C09p53360 Brassica napus HOM05D003235 ORTHO05D003863 9.5e-11 70.5 55 74.5
Glyma.05G131100 Glycine max HOM05D003235 ORTHO05D003863 9.5e-11 70.5 57 70.2
Glyma.08G085800 Glycine max HOM05D003235 ORTHO05D003863 9.5e-11 70.5 57 70.2
HPP92_011715 Vanilla planifolia HOM05D003235 ORTHO05D003863 9.5e-11 70.5 55 65.5
BcaC04g19724 Brassica carinata HOM05D003235 ORTHO05D003863 1.2e-10 70.1 55 72.7
BolC9t58209H Brassica oleracea HOM05D003235 ORTHO05D003863 1.2e-10 70.1 55 72.7
A10p17830 Brassica napus HOM05D003235 ORTHO05D003863 2.8e-10 68.9 55 70.9
BcaB08g36361 Brassica carinata HOM05D003235 ORTHO05D003863 4.7e-10 68.2 55 72.7
Psat5g172600 Pisum sativum HOM05D002471 ORTHO05D017489 4.7e-10 68.2 50 72.0
MBI18_g45952_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D017489 1.8e-09 66.2 55 58.2
vmacro17286 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 1.8e-09 66.2 36 83.3
HPP92_017619 Vanilla planifolia HOM05D003235 ORTHO05D003863 6.8e-09 64.3 46 69.6
Aqoxy7G01395 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 8.9e-09 63.9 45 66.7
CDE05G0254 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.2e-08 63.5 55 60.0
MBI02_g34309_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 2.0e-08 62.8 55 58.2
PGR042G2488 Punica granatum HOM05D003235 ORTHO05D003863 2.6e-08 62.4 55 60.0
Zm00001eb323170 Zea mays HOM05D003235 ORTHO05D003863 2.6e-08 62.4 49 65.3
Zm00001eb396350 Zea mays HOM05D003235 ORTHO05D003863 2.6e-08 62.4 49 65.3
Os07g0531600 Oryza sativa ssp. japonica HOM05D003235 ORTHO05D003863 3.4e-08 62.0 49 67.3
Aqoxy4G02019 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 4.9e-07 58.2 46 65.2


User provided reference genes

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