Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 2.0e-141 505.8 251 100.0
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 6.3e-132 474.2 250 92.4
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 6.3e-132 474.2 250 92.8
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 1.7e-124 449.5 250 86.4
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 1.7e-124 449.5 250 86.4
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 6.4e-124 447.6 250 86.4
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 1.4e-123 446.4 250 86.0
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 5.4e-123 444.5 250 84.0
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 5.4e-123 444.5 251 86.5
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 7.0e-123 444.1 250 85.6
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 7.0e-123 444.1 250 85.6
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 1.2e-122 443.4 250 85.6
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.6e-122 443.0 251 86.1
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 4.6e-122 441.4 250 83.2
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 6.0e-122 441.0 250 83.2
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 1.3e-121 439.9 250 82.8
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 2.3e-121 439.1 262 83.6
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 2.3e-121 439.1 250 83.6
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 6.6e-121 437.6 250 85.2
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 8.6e-121 437.2 250 84.4
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 8.6e-121 437.2 251 84.5
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 1.5e-120 436.4 250 84.4
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 5.6e-120 434.5 250 84.0
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 7.3e-120 434.1 250 84.8
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.2e-119 433.3 250 82.8
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 3.6e-119 431.8 251 82.9
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 3.6e-119 431.8 250 83.2
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 6.2e-119 431.0 250 83.2
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 6.2e-119 431.0 257 82.9
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 1.1e-118 430.3 250 83.6
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 1.4e-118 429.9 250 82.4
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 1.4e-118 429.9 250 83.2
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 1.4e-118 429.9 250 82.4
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 1.8e-118 429.5 250 82.4
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 2.3e-118 429.1 251 82.1
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 4.0e-118 428.3 277 76.9
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 4.0e-118 428.3 250 82.4
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 6.8e-118 427.6 251 82.1
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 6.8e-118 427.6 251 82.1
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 8.9e-118 427.2 250 81.2
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 8.9e-118 427.2 251 80.9
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 1.2e-117 426.8 250 83.2
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 1.2e-117 426.8 251 80.9
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 1.2e-117 426.8 278 75.9
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 1.2e-117 426.8 250 81.6
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 1.5e-117 426.4 251 82.9
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 2.0e-117 426.0 251 82.1
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 2.6e-117 425.6 250 80.8
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 3.4e-117 425.2 250 81.6
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 3.4e-117 425.2 254 83.1
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 4.4e-117 424.9 250 83.2
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 5.8e-117 424.5 251 80.9
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 7.5e-117 424.1 253 82.6
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 7.5e-117 424.1 254 82.3
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 9.8e-117 423.7 253 83.0
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 1.3e-116 423.3 251 82.5
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 1.3e-116 423.3 250 80.8
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 1.3e-116 423.3 250 82.0
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 1.3e-116 423.3 252 81.7
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 1.7e-116 422.9 250 80.8
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.7e-116 422.9 250 81.2
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 3.7e-116 421.8 250 82.4
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 3.7e-116 421.8 250 80.4
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 4.9e-116 421.4 251 80.9
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 1.1e-115 420.2 250 79.6
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 1.1e-115 420.2 252 81.3
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 2.4e-115 419.1 250 80.8
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.4e-115 419.1 271 76.4
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 7.1e-115 417.5 250 80.8
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 1.2e-114 416.8 255 80.8
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 2.1e-114 416.0 251 79.7
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 2.1e-114 416.0 252 79.4
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 2.7e-114 415.6 250 80.0
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 1.3e-113 413.3 250 79.2
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 1.7e-113 412.9 252 81.7
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 2.3e-113 412.5 235 82.1
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 2.5e-112 409.1 252 80.6
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 2.5e-112 409.1 290 71.0
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 4.3e-112 408.3 251 77.7
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 9.5e-112 407.1 222 85.6
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 4.7e-111 404.8 250 76.8
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 2.3e-110 402.5 222 84.7
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 1.5e-109 399.8 250 76.8
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 9.9e-109 397.1 251 78.5
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 8.3e-108 394.0 250 76.0
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 2.3e-105 386.0 233 79.8
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 2.3e-105 386.0 233 79.8
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 1.6e-103 379.8 249 76.3
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 6.2e-103 377.9 221 81.9
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 2.0e-101 372.9 256 72.7
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 4.4e-101 371.7 251 72.9
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 1.2e-98 363.6 208 82.7
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.2e-98 363.6 250 72.8
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 2.1e-98 362.8 252 69.4
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 4.6e-98 361.7 250 73.2
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 6.0e-98 361.3 209 83.7
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 7.8e-98 360.9 221 81.0
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 2.3e-97 359.4 450 47.1
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 6.6e-97 357.8 252 72.2
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 1.1e-96 357.1 252 69.4
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 3.3e-96 355.5 250 68.8
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 1.6e-95 353.2 211 81.5
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 1.4e-94 350.1 279 66.3
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 3.4e-93 345.5 250 66.8
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 5.8e-93 344.7 254 70.5
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 3.5e-90 335.5 238 69.3
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 4.6e-90 335.1 190 84.2
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 8.7e-89 330.9 251 68.9
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.9e-88 329.7 242 69.4
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 4.3e-88 328.6 195 78.5
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 1.1e-86 323.9 250 65.6
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 2.9e-84 315.8 251 66.9
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 4.9e-84 315.1 269 63.2
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 2.5e-80 302.8 251 60.2
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 3.3e-80 302.4 202 74.8
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.1e-79 299.7 268 59.7
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 2.0e-77 293.1 210 69.0
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 1.0e-76 290.8 157 91.7
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 2.2e-76 289.7 335 52.8
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 3.5e-74 282.3 170 80.0
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 1.0e-73 280.8 157 84.1
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.3e-73 280.4 250 60.4
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 2.1e-71 273.1 208 65.9
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 2.8e-71 272.7 251 51.8
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 5.5e-67 258.5 240 52.9
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 9.3e-67 257.7 236 55.1
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 4.6e-66 255.4 283 52.3
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 3.1e-62 242.7 206 64.6
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.9e-60 236.1 141 83.0
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 5.5e-59 231.9 180 65.6
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 1.0e-52 211.1 147 68.0
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 7.7e-45 184.9 114 77.2
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 3.6e-42 176.0 116 71.6
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 1.3e-39 167.5 129 69.0
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 7.0e-38 161.8 91 80.2
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 1.8e-33 147.1 94 72.3
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 3.0e-33 146.4 174 48.3
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 7.0e-30 135.2 250 38.8
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-29 134.4 102 67.6
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 3.9e-12 76.3 53 67.9


User provided reference genes

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