Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 5.8e-103 377.5 179 100.0
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 5.8e-63 244.6 141 80.9
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 2.5e-61 239.2 144 75.0
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 5.5e-61 238.0 161 70.2
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.8e-59 233.0 142 72.5
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 2.3e-59 232.6 142 72.5
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 2.5e-58 229.2 138 76.1
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 2.1e-57 226.1 158 66.5
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 4.8e-57 224.9 139 76.3
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 8.2e-57 224.2 125 80.0
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 8.2e-57 224.2 141 73.8
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 8.2e-57 224.2 143 72.7
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 8.2e-57 224.2 139 71.9
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.4e-56 223.4 142 74.6
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 3.1e-56 222.2 161 64.0
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 3.1e-56 222.2 139 71.9
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 3.1e-56 222.2 146 69.2
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 4.0e-56 221.9 119 82.4
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 6.9e-56 221.1 159 64.8
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 1.5e-55 219.9 152 67.8
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 1.5e-55 219.9 122 79.5
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.0e-55 219.5 162 63.0
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 4.5e-55 218.4 161 62.1
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 4.5e-55 218.4 162 66.0
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 5.8e-55 218.0 157 65.0
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 5.8e-55 218.0 137 73.7
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 7.6e-55 217.6 161 62.7
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 7.6e-55 217.6 146 69.9
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 2.9e-54 215.7 157 65.6
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.9e-54 215.7 159 60.4
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 3.8e-54 215.3 144 70.1
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 6.5e-54 214.5 156 61.5
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 6.5e-54 214.5 146 68.5
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.5e-54 214.5 159 64.8
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 6.5e-54 214.5 133 70.7
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 8.4e-54 214.2 154 66.9
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 8.4e-54 214.2 159 63.5
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 1.1e-53 213.8 144 70.1
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.4e-53 213.4 136 72.1
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.9e-53 213.0 145 70.3
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 1.9e-53 213.0 143 67.8
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.5e-53 211.5 146 69.9
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 5.5e-53 211.5 135 70.4
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 7.1e-53 211.1 151 66.9
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 9.3e-53 210.7 145 70.3
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.2e-52 210.3 163 63.2
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.2e-52 210.3 144 68.8
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 1.2e-52 210.3 140 71.4
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.6e-52 209.9 145 66.9
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.1e-52 209.5 142 70.4
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 3.5e-52 208.8 140 70.0
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 3.5e-52 208.8 137 69.3
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 4.6e-52 208.4 140 70.0
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 6.1e-52 208.0 131 70.2
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 7.9e-52 207.6 145 66.2
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 7.9e-52 207.6 127 70.1
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 7.9e-52 207.6 138 70.3
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.0e-51 207.2 140 69.3
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 1.0e-51 207.2 166 60.2
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.3e-51 206.1 135 68.1
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 3.0e-51 205.7 141 70.2
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 3.3e-50 202.2 154 59.7
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 7.4e-50 201.1 134 67.9
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.3e-49 200.3 141 69.5
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.8e-49 199.1 144 68.8
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 4.8e-49 198.4 118 73.7
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 4.8e-49 198.4 118 73.7
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 8.2e-49 197.6 137 67.2
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 1.1e-48 197.2 158 59.5
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.8e-48 196.4 159 57.2
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 3.1e-48 195.7 144 63.9
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 5.3e-48 194.9 146 61.6
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 9.0e-48 194.1 152 60.5
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.2e-47 193.7 136 66.9
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 3.4e-47 192.2 141 63.1
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 7.7e-47 191.0 136 65.4
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.0e-46 190.7 139 64.0
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 1.7e-46 189.9 135 64.4
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 1.7e-46 189.9 139 64.0
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.7e-46 189.9 131 66.4
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 2.9e-46 189.1 136 64.7
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 6.5e-46 188.0 141 63.1
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 6.5e-46 188.0 135 63.0
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 6.5e-46 188.0 135 63.0
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 8.5e-46 187.6 136 62.5
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.9e-45 186.4 136 63.2
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.9e-45 186.4 147 59.2
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.9e-45 186.4 139 63.3
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 1.9e-45 186.4 140 62.9
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 1.9e-45 186.4 147 61.2
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 3.2e-45 185.7 135 62.2
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 7.2e-45 184.5 116 70.7
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 7.2e-45 184.5 109 73.4
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.6e-44 181.8 136 61.0
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.0e-43 180.6 177 50.3
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.4e-43 180.3 137 58.4
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 3.9e-43 178.7 137 55.5
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 5.1e-43 178.3 160 60.6
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 2.0e-42 176.4 134 57.5
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 3.3e-42 175.6 103 78.6
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 7.4e-42 174.5 136 63.2
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 3.3e-34 149.1 117 57.3
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 2.8e-33 146.0 96 65.6
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 9.1e-32 141.0 133 47.4
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 3.2e-29 132.5 116 57.8
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 7.2e-29 131.3 166 46.4
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 3.6e-28 129.0 98 55.1
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 6.1e-28 128.3 115 47.8
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.4e-27 127.1 85 68.2
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 8.8e-27 124.4 75 73.3
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.4e-24 117.1 89 57.3
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 3.5e-23 112.5 87 56.3
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 4.5e-23 112.1 87 55.2
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.3e-22 110.5 93 49.5
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 4.2e-21 105.5 117 48.7
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 9.4e-21 104.4 60 78.3
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 1.2e-20 104.0 134 42.5
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.8e-19 100.1 99 50.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 4.4e-18 95.5 92 48.9
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 2.2e-17 93.2 99 42.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 2.7e-15 86.3 67 61.2
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.9e-14 82.8 61 63.9
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.1e-12 76.6 61 63.9
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 7.5e-10 68.2 56 53.6
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 2.4e-08 63.2 35 77.1
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 3.1e-08 62.8 70 44.3
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 9.1e-08 61.2 40 67.5
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 1.7e-06 57.0 83 39.8
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 2.3e-06 56.6 61 42.6
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 3.8e-06 55.8 61 37.7


User provided reference genes

Program Settings