Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 2.0e-289 998.4 527 100.0
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 1.6e-132 477.2 526 54.0
Migut.O00435 Erythranthe guttata HOM05D006718 ORTHO05D008492 7.8e-132 474.9 536 56.2
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 1.5e-127 460.7 499 55.1
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 7.7e-71 272.3 597 38.0
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 2.2e-70 270.8 443 43.1
Migut.N01880 Erythranthe guttata HOM05D006718 ORTHO05D008492 5.2e-67 259.6 257 66.1
Migut.N01879 Erythranthe guttata HOM05D006718 ORTHO05D008492 1.6e-63 248.1 276 52.2
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 3.4e-58 230.3 339 44.5
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 1.3e-57 228.4 379 42.0
Cc02_g32070 Coffea canephora HOM05D006718 ORTHO05D008492 5.4e-56 223.0 563 34.3
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 4.5e-55 219.9 468 38.0
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 5.5e-53 213.0 317 46.4
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 5.5e-53 213.0 527 35.9
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 5.5e-53 213.0 516 37.2
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 9.4e-53 212.2 516 37.2
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 4.7e-52 209.9 567 34.7
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 1.0e-51 208.8 551 35.2
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 4.0e-51 206.8 504 35.5
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 5.2e-51 206.5 461 38.0
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 5.7e-50 203.0 573 33.5
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 5.7e-50 203.0 523 36.3
AUR62034103 Chenopodium quinoa HOM05D006718 ORTHO05D008492 2.8e-49 200.7 553 36.7
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 3.7e-49 200.3 561 34.9
CSS0042038 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 6.3e-49 199.5 226 55.3
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 1.1e-48 198.7 485 34.4
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 5.4e-48 196.4 233 49.4
Hund06826 Selenicereus undatus HOM05D006718 ORTHO05D008492 9.2e-48 195.7 412 39.6
AUR62014308 Chenopodium quinoa HOM05D006718 ORTHO05D008492 1.2e-47 195.3 569 34.1
Peaxi162Scf00647g00315 Petunia axillaris HOM05D006718 ORTHO05D008492 1.1e-45 188.7 462 35.7
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 1.5e-45 188.3 412 39.1
EL10Ac4g08778 Beta vulgaris HOM05D006718 ORTHO05D008492 1.9e-45 188.0 572 34.1
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 1.9e-45 188.0 503 34.8
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 3.3e-45 187.2 534 37.3
Sc09g0004890 Simmondsia chinensis HOM05D006718 ORTHO05D008492 5.6e-45 186.4 443 37.0
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 9.5e-45 185.7 524 33.8
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 1.4e-43 181.8 497 35.4
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 1.8e-43 181.4 365 39.2
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 7.5e-42 176.0 455 34.7
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 2.9e-41 174.1 448 36.2
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 8.3e-41 172.6 546 34.2
CANSAT56G0860 Cannabis sativa HOM05D006718 ORTHO05D008492 1.1e-40 172.2 538 33.3
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.4e-40 171.8 532 34.6
PGR044G1203 Punica granatum HOM05D006718 ORTHO05D008492 7.0e-40 169.5 571 31.7
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 2.0e-39 167.9 528 34.3
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 3.5e-39 167.2 532 34.2
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 7.8e-39 166.0 521 31.7
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 7.8e-39 166.0 472 34.1
PSO339G3483 Papaver somniferum HOM05D006718 ORTHO05D008492 7.8e-39 166.0 520 33.5
Ah.06g191200 Amaranthus hybridus HOM05D006718 ORTHO05D008492 3.0e-38 164.1 500 33.8
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 6.6e-38 162.9 323 40.2
Glyma.14G084400 Glycine max HOM05D006718 ORTHO05D008492 1.1e-37 162.2 539 33.2
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 1.5e-37 161.8 529 32.7
Eucgr.J00311 Eucalyptus grandis HOM05D006718 ORTHO05D008492 3.3e-37 160.6 524 32.1
PSO384G1654 Papaver somniferum HOM05D006718 ORTHO05D008492 9.5e-37 159.1 518 32.6
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 1.2e-36 158.7 469 34.1
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 2.1e-36 157.9 357 37.3
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 2.8e-36 157.5 469 34.1
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 2.8e-36 157.5 387 35.7
vmacro20846 Vaccinium macrocarpon HOM05D006718 ORTHO05D008492 4.7e-36 156.8 445 32.6
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 8.0e-36 156.0 514 31.5
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 1.4e-35 155.2 354 35.3
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 1.4e-35 155.2 401 36.9
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 1.8e-35 154.8 498 32.9
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 1.8e-35 154.8 466 34.3
Lsat_1_v5_gn_4_139420 Lactuca sativa HOM05D006718 ORTHO05D008492 3.1e-35 154.1 531 33.0
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 4.0e-35 153.7 496 32.7
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 5.2e-35 153.3 342 36.5
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 2.0e-34 151.4 354 37.6
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 2.0e-34 151.4 494 34.2
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 2.0e-34 151.4 406 35.7
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 3.4e-34 150.6 449 33.4
COL.COLO4_28900 Corchorus olitorius HOM05D006718 ORTHO05D008492 4.4e-34 150.2 241 41.9
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 7.5e-34 149.4 551 30.7
Glyma.17G240500 Glycine max HOM05D006718 ORTHO05D008492 2.2e-33 147.9 552 31.5
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 3.7e-33 147.1 340 35.3
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 4.9e-33 146.7 492 33.3
Phvul.011G216700 Phaseolus vulgaris HOM05D006718 ORTHO05D008492 8.3e-33 146.0 504 33.7
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 3.2e-32 144.1 444 32.2
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 4.1e-32 143.7 284 40.8
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 4.1e-32 143.7 411 34.8
Lj3g0008993 Lotus japonicus HOM05D006718 ORTHO05D008492 9.2e-32 142.5 255 42.7
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 1.2e-31 142.1 479 31.9
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 1.6e-31 141.7 548 32.5
Aqoxy1G00086 Aquilegia oxysepala HOM05D006718 ORTHO05D008492 2.7e-31 141.0 539 30.4
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 2.7e-31 141.0 455 33.2
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 4.6e-31 140.2 504 33.1
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 1.3e-30 138.7 299 38.5
Os01g0814000 Oryza sativa ssp. japonica HOM05D006718 ORTHO05D008492 2.3e-30 137.9 237 39.7
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 3.0e-30 137.5 532 32.0
ATR0068G071 Amborella trichopoda HOM05D006718 ORTHO05D008492 7.3e-29 132.9 324 37.7
Cpa.g.sc163.26 Carica papaya HOM05D006718 ORTHO05D008492 4.7e-28 130.2 194 45.9
Rhsim01G0121600 Rhododendron simsii HOM05D006718 ORTHO05D008492 5.8e-26 123.2 490 31.8
TPR.G33809 Trifolium pratense HOM05D006718 ORTHO05D008492 9.8e-26 122.5 241 38.6
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 2.9e-25 120.9 512 31.6
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 2.9e-25 120.9 457 31.5
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 3.7e-25 120.6 244 43.4
FAN26G3384 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.2e-23 115.5 547 30.2
Zm00001eb149940 Zea mays HOM05D006718 ORTHO05D008492 1.6e-23 115.2 206 37.4
Oeu051588.1 Olea europaea HOM05D054970 ORTHO05D049444 1.3e-22 112.1 227 38.8
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 3.9e-22 110.5 577 28.4
CDE04G2801 Ceratophyllum demersum HOM05D001339 ORTHO05D003609 2.4e-16 91.3 551 28.3
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 5.4e-16 90.1 438 29.0
Mapoly0025s0136 Marchantia polymorpha HOM05D006718 ORTHO05D008492 5.4e-16 90.1 332 30.1
AagrBONN_evm.TU.Sc2ySwM_344.1162 Anthoceros agrestis HOM05D006718 ORTHO05D008492 3.6e-12 77.4 299 28.1
Pp3c27_4140 Physcomitrium patens HOM05D006718 ORTHO05D008492 1.5e-10 72.0 311 27.0
BcaB05g23323 Brassica carinata HOM05D006718 ORTHO05D008492 1.4e-08 65.5 112 42.9
Peaxi162Scf00558g00016 Petunia axillaris HOM05D006718 ORTHO05D008492 4.2e-08 63.9 167 30.5


User provided reference genes

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