Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 1.6e-112 409.5 210 100.0
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 1.6e-88 329.7 210 80.0
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 2.8e-80 302.4 210 75.7
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 2.6e-78 295.8 218 73.9
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 7.5e-78 294.3 219 74.4
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 2.9e-77 292.4 286 59.1
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 4.9e-77 291.6 215 74.0
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 4.9e-77 291.6 215 74.0
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 4.6e-75 285.0 225 72.0
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.0e-74 283.9 215 71.2
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 3.0e-74 282.3 216 72.7
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 6.6e-74 281.2 216 73.1
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 3.3e-73 278.9 218 71.1
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 2.1e-72 276.2 210 73.3
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 3.6e-72 275.4 217 71.9
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 1.1e-71 273.9 207 69.6
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 3.1e-71 272.3 240 64.2
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 2.0e-70 269.6 212 70.8
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 3.4e-70 268.9 211 71.1
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 4.4e-70 268.5 223 70.0
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 5.8e-70 268.1 214 69.6
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 9.9e-70 267.3 222 70.3
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 9.9e-70 267.3 218 70.2
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 1.7e-69 266.5 219 68.9
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 3.7e-69 265.4 215 69.8
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 1.9e-68 263.1 254 60.2
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 1.9e-68 263.1 214 68.2
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 2.4e-68 262.7 210 71.0
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 2.4e-68 262.7 227 65.6
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.1e-68 261.9 218 69.7
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 7.1e-68 261.2 214 67.8
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.2e-67 260.4 217 68.2
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.6e-67 260.0 215 68.8
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.6e-67 258.5 219 65.8
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 6.0e-67 258.1 214 69.6
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 6.0e-67 258.1 215 67.4
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 6.0e-67 258.1 214 69.6
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 7.8e-67 257.7 216 67.1
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 3.9e-66 255.4 214 68.2
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.1e-65 253.8 215 66.5
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 5.6e-65 251.5 230 65.7
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 5.6e-65 251.5 227 65.6
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 5.6e-65 251.5 214 65.9
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 5.6e-65 251.5 215 68.4
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.6e-64 250.0 218 64.7
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.8e-64 249.2 220 64.5
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 4.7e-64 248.4 220 66.8
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 8.1e-64 247.7 216 64.4
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.8e-63 246.5 217 64.5
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 1.8e-63 246.5 216 65.3
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 3.1e-63 245.7 264 56.8
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 5.2e-63 245.0 217 60.8
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 6.8e-63 244.6 159 78.0
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 8.9e-63 244.2 169 76.9
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 8.9e-63 244.2 212 67.0
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 1.2e-62 243.8 213 64.8
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.2e-62 243.8 212 67.0
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 1.2e-62 243.8 210 64.3
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 1.2e-62 243.8 212 65.1
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 2.6e-62 242.7 210 66.2
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 4.4e-62 241.9 207 64.3
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 4.4e-62 241.9 237 60.3
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 4.4e-62 241.9 163 76.7
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 4.4e-62 241.9 212 63.7
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 7.6e-62 241.1 214 65.0
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 7.6e-62 241.1 215 63.7
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 9.9e-62 240.7 238 60.1
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 9.9e-62 240.7 212 64.2
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 1.3e-61 240.4 213 64.3
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 1.3e-61 240.4 213 64.3
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 1.7e-61 240.0 151 82.1
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 2.2e-61 239.6 203 68.0
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 4.9e-61 238.4 193 69.4
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 8.4e-61 237.7 225 59.6
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 5.4e-60 235.0 277 52.0
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 1.6e-59 233.4 216 63.0
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 3.5e-59 232.3 208 65.4
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 4.6e-59 231.9 159 78.6
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 6.0e-59 231.5 219 60.3
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.0e-58 230.7 130 88.5
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 3.0e-58 229.2 219 59.8
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 8.7e-58 227.6 219 59.8
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 8.7e-58 227.6 219 59.8
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 1.1e-57 227.3 223 59.6
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.1e-57 227.3 203 64.5
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 1.9e-57 226.5 207 61.8
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 1.9e-57 226.5 225 61.3
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.3e-57 225.7 194 68.0
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 4.3e-57 225.3 202 63.9
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 4.3e-57 225.3 220 60.0
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 4.3e-57 225.3 219 59.8
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 9.6e-57 224.2 217 59.4
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 1.3e-56 223.8 219 58.9
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 1.6e-56 223.4 223 60.1
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 1.6e-56 223.4 225 57.8
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 2.1e-56 223.0 219 60.7
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 3.6e-56 222.2 214 58.9
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 6.2e-56 221.5 217 60.8
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 1.4e-55 220.3 215 61.9
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 1.4e-55 220.3 197 63.5
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 2.4e-55 219.5 209 59.8
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 2.4e-55 219.5 222 60.4
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 4.0e-55 218.8 200 64.0
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 5.3e-55 218.4 210 60.5
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 9.0e-55 217.6 210 61.0
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 1.2e-54 217.2 217 57.6
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 2.6e-54 216.1 218 56.4
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 5.8e-54 214.9 210 61.9
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 9.9e-54 214.2 209 58.9
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 2.2e-53 213.0 190 64.7
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 1.4e-52 210.3 168 71.4
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.9e-52 209.9 183 61.7
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 5.4e-52 208.4 120 86.7
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 9.3e-52 207.6 212 58.0
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 3.5e-51 205.7 142 75.4
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 1.3e-50 203.8 191 64.9
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.7e-50 203.4 150 68.0
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 3.0e-50 202.6 211 60.2
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 3.0e-50 202.6 237 53.2
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 1.5e-49 200.3 197 60.9
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 2.1e-48 196.4 200 57.0
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 3.1e-47 192.6 197 55.8
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 3.1e-47 192.6 158 64.6
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 5.3e-47 191.8 177 64.4
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 9.0e-47 191.0 180 62.8
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.2e-45 186.4 165 63.6
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 3.8e-45 185.7 211 52.6
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 3.5e-43 179.1 215 51.6
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 3.5e-43 179.1 213 49.8
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 7.9e-43 177.9 163 62.0
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 1.0e-42 177.6 124 71.0
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 1.3e-42 177.2 168 63.7
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 1.9e-41 173.3 195 54.9
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 9.6e-41 171.0 125 72.8
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 2.1e-40 169.9 133 65.4
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 2.8e-40 169.5 136 65.4
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.8e-39 166.8 157 59.9
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 5.3e-39 165.2 210 50.0
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 2.0e-38 163.3 130 66.2
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 2.0e-38 163.3 153 62.1
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 2.9e-37 159.5 136 58.1
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 4.2e-36 155.6 160 56.2
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 2.7e-35 152.9 150 59.3
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 2.0e-30 136.7 226 42.5
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 3.9e-26 122.5 132 47.7
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 2.2e-21 106.7 62 85.5
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 3.3e-17 92.8 73 74.0
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 9.7e-17 91.3 88 54.5
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 4.8e-16 89.0 146 38.4
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 1.5e-14 84.0 116 38.8
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 6.7e-10 68.6 51 66.7
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 9.7e-09 64.7 35 94.3
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 3.7e-08 62.8 39 71.8
Cpa.g.sc43.61 Carica papaya HOM05D002231 ORTHO05D006103 1.1e-07 61.2 106 43.4


User provided reference genes

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