Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 4.7e-183 644.4 330 100.0
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 3.0e-174 615.1 327 96.0
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.5e-173 612.8 328 94.8
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 4.5e-170 601.3 328 92.1
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 1.0e-169 600.1 328 92.4
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 2.9e-169 598.6 328 92.1
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 5.0e-169 597.8 328 91.8
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 1.1e-168 596.7 328 91.8
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 7.2e-168 594.0 327 91.1
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 7.2e-168 594.0 328 90.5
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.6e-167 592.8 329 91.8
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 2.7e-167 592.0 325 92.3
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.7e-167 592.0 328 90.2
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.4e-166 589.7 329 91.2
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.2e-165 586.6 326 91.4
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.7e-165 584.3 328 90.2
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 2.8e-164 582.0 328 88.7
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 2.8e-164 582.0 328 89.0
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 8.3e-164 580.5 355 83.9
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 1.8e-163 579.3 328 88.1
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 2.4e-163 578.9 328 88.4
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 3.1e-163 578.6 328 88.4
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 9.1e-163 577.0 329 86.3
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.2e-162 576.6 329 86.3
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.6e-162 576.2 328 88.1
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 3.5e-162 575.1 329 86.9
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 5.9e-162 574.3 326 88.0
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 5.9e-162 574.3 327 88.1
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 7.7e-162 573.9 328 86.9
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 7.7e-162 573.9 325 88.3
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 1.0e-161 573.5 329 85.7
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 1.3e-161 573.2 328 86.9
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.7e-161 572.8 327 87.8
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.7e-161 572.8 327 87.8
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 2.9e-161 572.0 327 87.2
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 2.9e-161 572.0 327 87.5
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 3.8e-161 571.6 329 87.2
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 3.3e-160 568.5 328 86.6
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 5.5e-160 567.8 327 85.9
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 5.5e-160 567.8 327 86.2
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 9.5e-160 567.0 329 85.1
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.2e-159 566.6 329 87.2
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.2e-159 566.6 329 87.2
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 2.1e-159 565.8 327 85.9
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 3.6e-159 565.1 328 86.3
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 3.6e-159 565.1 327 85.6
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 8.0e-159 563.9 326 86.5
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 4.0e-158 561.6 326 86.5
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 4.0e-158 561.6 329 85.4
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 6.8e-158 560.8 328 85.7
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 6.8e-158 560.8 328 85.7
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.5e-157 559.7 328 85.7
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 4.4e-157 558.1 328 85.7
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.7e-157 557.8 327 84.7
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 9.8e-157 557.0 328 86.0
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 1.3e-156 556.6 327 84.4
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 1.3e-156 556.6 328 85.7
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.3e-156 556.6 300 94.0
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 2.2e-156 555.8 328 85.1
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 2.2e-156 555.8 328 85.1
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 2.8e-156 555.4 328 85.7
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.3e-156 554.3 327 84.1
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 1.8e-155 552.7 328 85.4
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 1.8e-155 552.7 328 84.5
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 1.8e-155 552.7 328 84.5
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 9.2e-155 550.4 328 83.8
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 1.6e-154 549.7 328 84.1
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 3.5e-154 548.5 334 83.5
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 5.9e-154 547.7 328 84.5
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 5.9e-154 547.7 328 84.5
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 6.6e-153 544.3 367 77.9
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 6.6e-153 544.3 325 84.0
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.5e-152 543.1 382 74.9
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 4.3e-152 541.6 327 82.9
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 1.2e-151 540.0 327 82.6
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.6e-151 539.7 327 82.6
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.6e-151 539.7 327 82.6
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.6e-151 539.7 327 82.6
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.6e-151 539.7 327 82.6
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 2.8e-151 538.9 327 82.6
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 3.6e-151 538.5 327 82.3
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 8.0e-151 537.3 327 82.3
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 8.0e-151 537.3 328 81.7
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 1.8e-150 536.2 330 80.6
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 3.1e-150 535.4 327 82.0
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 5.2e-150 534.6 330 80.3
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 8.9e-150 533.9 327 82.9
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 2.0e-149 532.7 327 81.3
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.2e-148 529.3 328 80.8
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.2e-148 529.3 327 82.0
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.4e-148 527.7 328 80.2
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.4e-147 525.8 304 85.9
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 3.2e-147 525.4 327 80.7
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 5.4e-147 524.6 452 63.3
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 9.2e-147 523.9 314 83.1
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 5.0e-145 518.1 325 80.6
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 8.6e-145 517.3 328 81.4
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 5.6e-144 514.6 328 78.4
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 2.1e-143 512.7 328 80.5
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 6.2e-143 511.1 296 89.2
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 2.3e-142 509.2 328 80.5
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 5.8e-141 504.6 328 78.4
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 4.9e-140 501.5 327 75.8
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.4e-139 500.0 326 80.4
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 7.0e-139 497.7 328 76.8
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 7.8e-138 494.2 333 74.8
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 1.5e-136 490.0 329 78.4
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.4e-134 483.4 326 73.0
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 1.8e-134 483.0 332 78.0
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 2.6e-133 479.2 328 76.5
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 7.5e-133 477.6 374 68.4
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 2.3e-129 466.1 279 82.4
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.8e-126 456.4 323 76.2
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 1.9e-115 419.9 324 63.3
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.6e-114 416.8 233 90.1
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 3.1e-110 402.5 318 62.9
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 3.4e-109 399.1 326 63.5
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 4.5e-109 398.7 234 84.2
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 1.2e-98 364.0 272 69.5
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 2.7e-98 362.8 224 82.6
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 3.0e-97 359.4 313 61.7
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 4.3e-96 355.5 334 63.5
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 7.6e-93 344.7 197 87.3
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 5.5e-91 338.6 235 69.8
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 1.1e-86 324.3 333 57.4
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 1.5e-85 320.5 220 77.3
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 2.9e-84 316.2 167 95.2
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 8.5e-84 314.7 220 75.5
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.5e-80 303.9 161 94.4
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 3.7e-79 299.3 220 73.6
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 5.0e-76 288.9 333 46.2
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 3.5e-69 266.2 279 57.7
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 2.9e-68 263.1 161 81.4
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 1.1e-64 251.1 327 48.9
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 1.3e-60 237.7 132 87.9
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 4.8e-55 219.2 130 83.8
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.5e-43 179.1 99 86.9
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 1.7e-39 167.5 181 55.8
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 2.2e-39 167.2 160 57.5
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 1.1e-38 164.9 150 57.3
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 1.3e-36 157.9 88 89.8
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 1.7e-36 157.5 103 75.7
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 2.1e-34 150.6 89 80.9
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 6.8e-33 145.6 88 80.7
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.2e-31 140.6 77 90.9
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 4.1e-30 136.3 87 82.8
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 7.0e-30 135.6 69 89.9
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 6.0e-29 132.5 74 86.5
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 7.8e-29 132.1 80 78.8
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 6.2e-26 122.5 65 90.8
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 8.1e-26 122.1 72 80.6
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 4.9e-23 112.8 72 79.2
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 4.1e-22 109.8 75 74.7
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 1.6e-21 107.8 63 85.7
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 5.6e-19 99.4 62 82.3
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 9.6e-11 72.0 85 49.4
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 3.4e-08 63.5 34 85.3
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 5.8e-08 62.8 33 87.9


User provided reference genes

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