Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 5.2e-162 574.3 288 100.0
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 4.4e-121 438.3 288 75.3
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.6e-118 429.9 279 78.1
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.3e-107 393.7 281 70.5
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.9e-103 379.8 289 69.6
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 9.9e-97 357.5 313 62.0
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 1.7e-96 356.7 311 61.4
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.7e-96 356.7 226 76.1
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 2.9e-96 355.9 312 63.8
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 8.4e-96 354.4 313 61.3
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.5e-95 351.7 310 62.6
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 4.6e-94 348.6 293 63.8
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 7.9e-94 347.8 313 60.7
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.0e-93 347.4 312 58.7
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 5.1e-93 345.1 313 60.4
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 6.7e-93 344.7 311 60.8
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.5e-92 343.6 310 60.6
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 5.3e-90 335.1 241 70.5
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.5e-89 333.6 240 70.0
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.3e-88 330.5 310 57.7
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 3.2e-87 325.9 205 79.0
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 3.5e-86 322.4 324 57.4
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 4.6e-86 322.0 315 59.0
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 1.0e-85 320.9 313 57.2
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.3e-85 319.7 314 56.7
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 8.7e-85 317.8 305 57.4
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.1e-84 317.4 312 56.1
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.5e-84 317.0 310 57.4
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 1.3e-83 313.9 249 66.3
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.3e-83 313.9 308 58.1
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 2.8e-83 312.8 226 70.4
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 6.3e-83 311.6 205 75.6
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 1.4e-82 310.5 204 74.5
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 5.9e-81 305.1 315 54.0
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 7.6e-81 304.7 201 72.6
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.3e-80 303.9 288 59.0
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 6.5e-80 301.6 187 78.1
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 8.5e-80 301.2 205 71.7
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.1e-79 300.8 288 54.5
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.1e-79 300.8 234 67.9
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 1.4e-79 300.4 212 71.7
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.9e-79 300.1 212 70.8
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 1.9e-79 300.1 232 65.5
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 5.5e-79 298.5 187 74.9
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 9.3e-79 297.7 288 54.2
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 2.1e-78 296.6 204 69.1
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.3e-77 293.9 179 79.3
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.3e-77 293.9 179 79.3
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 2.3e-77 293.1 187 73.8
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 5.1e-77 292.0 190 74.2
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 5.1e-77 292.0 293 56.0
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 6.7e-77 291.6 290 54.1
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.1e-76 290.8 264 57.6
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.5e-76 290.4 291 53.6
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 2.5e-76 289.7 206 70.9
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 2.5e-76 289.7 291 53.6
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 4.3e-76 288.9 289 53.6
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 5.7e-76 288.5 275 54.2
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 5.7e-76 288.5 264 55.3
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 5.7e-76 288.5 289 53.6
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 5.7e-76 288.5 244 63.9
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 7.4e-76 288.1 197 70.6
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 7.4e-76 288.1 264 55.3
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.3e-75 287.3 281 53.0
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 1.6e-75 287.0 221 63.8
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.6e-75 287.0 193 70.5
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 2.2e-75 286.6 214 65.9
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 6.3e-75 285.0 186 74.2
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 8.2e-75 284.6 188 72.9
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.4e-74 283.9 193 69.9
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 4.1e-74 282.3 210 66.2
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 4.1e-74 282.3 187 73.3
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 4.1e-74 282.3 222 64.9
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 5.3e-74 282.0 184 75.0
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 6.9e-74 281.6 269 56.9
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 9.0e-74 281.2 174 78.7
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.5e-73 280.4 207 69.1
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 2.0e-73 280.0 245 62.0
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.0e-73 280.0 227 65.6
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 2.6e-73 279.6 193 68.4
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 3.4e-73 279.3 241 61.4
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 4.5e-73 278.9 264 55.3
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.3e-72 277.3 187 70.1
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 1.3e-72 277.3 187 70.1
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.3e-72 277.3 201 65.2
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.3e-72 277.3 211 65.9
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.7e-72 276.9 210 67.1
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 2.2e-72 276.6 190 70.5
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 5.0e-72 275.4 213 64.8
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 6.5e-72 275.0 189 75.7
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 6.5e-72 275.0 223 61.0
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.5e-72 275.0 223 61.0
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 6.5e-72 275.0 188 70.7
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.5e-72 274.6 223 61.0
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 8.5e-72 274.6 190 72.6
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.1e-71 274.2 239 58.2
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.2e-70 270.8 187 67.9
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.2e-70 270.8 208 66.8
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.0e-69 267.7 169 76.9
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 1.0e-69 267.7 189 68.8
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 6.7e-69 265.0 186 70.4
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.1e-68 264.2 212 63.7
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 2.6e-68 263.1 185 73.5
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 3.3e-68 262.7 185 67.6
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 9.7e-68 261.2 247 55.1
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.3e-67 260.8 186 67.7
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 3.7e-67 259.2 186 67.7
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 2.0e-65 253.4 200 63.5
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 1.1e-63 247.7 178 68.0
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.0e-61 241.1 160 71.2
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.5e-60 237.3 179 65.4
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 5.7e-60 235.3 176 64.8
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 9.7e-60 234.6 263 50.6
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.4e-58 230.7 134 81.3
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 7.7e-57 224.9 186 62.4
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 5.5e-55 218.8 173 61.3
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 4.7e-54 215.7 143 74.8
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 2.3e-53 213.4 147 70.7
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 2.0e-52 210.3 132 78.0
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 3.3e-52 209.5 158 69.0
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 7.5e-52 208.4 156 67.3
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 1.9e-47 193.7 156 64.1
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.6e-46 189.5 109 80.7
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 3.6e-46 189.5 118 77.1
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 3.2e-39 166.4 93 82.8
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.2e-36 157.9 247 41.3
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.9e-33 145.6 217 45.6
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 2.1e-30 137.1 92 66.3
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.6e-30 136.3 112 65.2
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.6e-30 136.3 112 65.2
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.2e-28 131.3 133 47.4
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 5.7e-28 129.0 137 46.0
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 1.3e-27 127.9 156 39.7
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 3.7e-27 126.3 100 62.0
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 2.7e-25 120.2 99 61.6
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 7.3e-23 112.1 78 71.8
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 9.5e-23 111.7 82 69.5
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.9e-16 89.7 168 41.1
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 6.6e-16 89.0 84 58.3
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 4.1e-10 69.7 41 70.7
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 6.6e-08 62.4 108 45.4
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 6.6e-08 62.4 37 70.3
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.2e-06 58.2 117 36.8
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 3.6e-06 56.6 58 51.7


User provided reference genes

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