Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 4.3e-141 504.6 247 100.0
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.1e-95 352.8 227 75.3
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.0e-94 350.5 227 74.9
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.3e-92 343.6 227 75.8
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 9.8e-85 317.4 225 68.4
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 2.2e-84 316.2 226 70.4
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 3.1e-83 312.4 227 67.0
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 3.1e-83 312.4 226 67.7
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 5.4e-83 311.6 234 65.8
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 1.3e-81 307.0 227 67.4
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 5.0e-81 305.1 216 69.0
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 8.6e-81 304.3 231 67.5
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 8.6e-81 304.3 195 73.8
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 1.9e-80 303.1 210 73.3
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 4.2e-80 302.0 227 67.8
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 9.5e-80 300.8 231 65.4
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.2e-79 300.4 228 64.9
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 6.1e-79 298.1 227 67.0
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 8.0e-79 297.7 230 63.5
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.0e-78 297.4 227 65.6
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 1.8e-78 296.6 227 67.0
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 2.3e-78 296.2 215 68.4
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 4.0e-78 295.4 239 64.0
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 6.8e-78 294.7 176 77.3
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 1.2e-77 293.9 218 65.6
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 1.2e-77 293.9 214 65.4
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 1.2e-77 293.9 228 67.1
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 2.0e-77 293.1 227 64.3
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 4.4e-77 292.0 214 69.2
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 4.4e-77 292.0 222 68.0
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 4.4e-77 292.0 211 67.3
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 4.4e-77 292.0 195 69.7
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 1.7e-76 290.0 229 66.4
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 1.7e-76 290.0 229 65.9
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 2.2e-76 289.7 196 70.9
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 2.9e-76 289.3 230 66.5
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 4.9e-76 288.5 172 75.0
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 6.3e-76 288.1 207 66.7
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 1.1e-75 287.3 227 63.0
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 2.4e-75 286.2 185 73.0
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 2.4e-75 286.2 234 63.7
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 3.2e-75 285.8 227 60.8
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.4e-75 285.0 227 63.0
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 7.0e-75 284.6 179 73.7
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 7.0e-75 284.6 189 72.0
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.2e-75 284.3 234 62.4
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 9.2e-75 284.3 224 65.6
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 1.6e-74 283.5 226 64.2
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.7e-74 282.7 225 63.1
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 3.5e-74 282.3 201 68.7
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 5.9e-74 281.6 227 63.4
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 7.8e-74 281.2 227 61.7
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 1.0e-73 280.8 235 62.6
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 1.0e-73 280.8 181 70.7
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 3.9e-73 278.9 198 69.7
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 3.9e-73 278.9 230 62.2
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 6.6e-73 278.1 155 81.9
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 6.6e-73 278.1 184 68.5
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 8.6e-73 277.7 225 63.1
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 2.5e-72 276.2 232 61.6
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 4.3e-72 275.4 227 58.6
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 9.5e-72 274.2 181 71.3
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 9.5e-72 274.2 189 69.8
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 1.6e-71 273.5 213 64.8
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 2.8e-71 272.7 189 69.3
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 3.6e-71 272.3 225 61.3
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 4.7e-71 271.9 178 71.9
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 1.4e-70 270.4 229 59.0
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 8.9e-70 267.7 209 67.9
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.5e-69 266.9 168 77.4
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 2.6e-69 266.2 236 64.4
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 2.6e-69 266.2 176 69.9
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.4e-69 265.8 211 65.4
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 3.4e-69 265.8 225 60.0
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 6.4e-68 261.5 187 70.6
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.1e-67 260.8 187 70.6
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 1.4e-67 260.4 187 70.6
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 1.4e-67 260.4 187 70.6
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 1.4e-67 260.4 211 59.2
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 3.2e-67 259.2 228 60.5
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 5.4e-67 258.5 230 62.2
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 5.4e-67 258.5 178 71.9
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 1.2e-66 257.3 230 61.7
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 1.2e-66 257.3 187 69.5
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 1.6e-66 256.9 213 63.4
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.6e-66 256.9 187 70.6
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 2.0e-66 256.5 214 61.2
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 1.0e-65 254.2 184 69.0
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 8.6e-65 251.1 174 64.9
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 8.6e-65 251.1 161 73.9
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 1.1e-64 250.8 169 66.9
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 1.2e-63 247.3 216 59.7
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.6e-63 246.9 227 57.7
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.2e-63 245.0 158 71.5
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.4e-62 243.8 196 58.2
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 2.6e-61 239.6 155 74.8
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 5.8e-61 238.4 210 58.6
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 5.8e-61 238.4 185 65.4
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 2.2e-60 236.5 156 69.9
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 4.9e-60 235.3 229 54.1
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 4.9e-60 235.3 151 68.2
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 2.5e-56 223.0 173 64.7
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 7.3e-56 221.5 184 63.6
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 1.2e-55 220.7 220 52.3
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 4.9e-52 208.8 258 49.2
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 7.1e-51 204.9 215 54.9
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 3.0e-49 199.5 182 54.9
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 7.3e-48 194.9 227 48.9
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 2.1e-47 193.4 176 57.4
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 3.2e-43 179.5 113 74.3
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 7.8e-42 174.9 113 75.2
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 1.7e-41 173.7 131 67.9
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 2.1e-39 166.8 113 72.6
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 2.6e-37 159.8 117 63.2
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.4e-35 153.3 95 75.8
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 4.6e-34 149.1 123 56.9
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 8.7e-33 144.8 95 68.4
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.5e-32 144.1 141 51.1
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 5.3e-30 135.6 94 66.0
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.9e-30 135.2 76 80.3
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 2.9e-28 129.8 83 71.1
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 2.5e-24 116.7 70 75.7
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 5.6e-24 115.5 114 52.6
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 2.8e-23 113.2 144 48.6
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 4.8e-23 112.5 70 72.9
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 4.2e-19 99.4 93 51.6
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 3.5e-18 96.3 81 55.6
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 7.4e-16 88.6 62 64.5
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 2.8e-15 86.7 55 69.1
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 1.3e-12 77.8 59 59.3
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 2.9e-12 76.6 69 58.0


User provided reference genes

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